Rw1G002110

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000387
Physical Location & Seq
Forward (+)
3827380 .. 3845380
18001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002110.1

Sequence Viewer

Length: 576 bp
ATGGCGGGTAAGACCGACTTGGTGTCTATTCGGGTGTCGTACCGCAACCTGAAGGATACGAAAGTTGAAATGATGGGGATGGATGATGAGCGTCATCATCGGATCGACCTCAATTCCTCTAGGCCATTTCCATCGTCGTCGTCATCCTCCGCTTGGGTTCTGAAAGGGAACGGCGATCTTTCGCCGTCGCAGAGTCTACCGCTAAAAGGTATTCCTGTGATCAATTGCAGGACAAATTTGATGAAGCTTCGTTGTGACTTCAAGGATGCATCTGTTAAGAAGCATGGGGTCAAGTTGGGGCTTATGTCGAGATTCTTCAAGGCTGTTGTCAGTGGGGTCCAAAATCAGCCTACTATTAATGCAGTCATTGATGGGGATGATATCATATATAGAGATTACATAGATATAAATGCAGCTGTGGGTACTCCAAAGGGCCTTGTTGTGCCAGTTATCCGCAATGCTGATAAGATGAATTATGGTGAGAATGAGAAGGAGATCAATCTTGCAAAGAAGGCAAATGAGGGATGTCTTTCAATTGATGATATGGTTGGAGTAGACACTGCCAGCGGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

191

Amino Acids

20.84

Weight (kDa)

8.72

Isoelectric Point (pI)

26.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-oxoacid_dh PF00198 78 - 185 1.3e-23 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 196, 555
AciI CCGC 6 cut(s) 5, 43, 150, 200, 454, 567
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 41, 424
AfiI CCNNNNNNNGG 2 cut(s) 153, 206
AgsI TTSAA 4 cut(s) 68, 262, 319, 534
AhdI GACNNNNNGTC 1 cut(s) 22
AluBI AGCT 2 cut(s) 247, 416
AluI AGCT 2 cut(s) 247, 416
AlwI GGATC 1 cut(s) 110
AoxI GGCC 2 cut(s) 122, 433
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 1 cut(s) 235
AseI ATTAAT 1 cut(s) 357
AspS9I GGNCC 2 cut(s) 337, 433
AsuHPI GGTGA 1 cut(s) 491
AvaII GGWCC 1 cut(s) 337
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BbvI GCAGC 1 cut(s) 425
BccI CCATC 4 cut(s) 67, 73, 139, 365
BceAI ACGGC 2 cut(s) 169, 187
BciVI GTATCC 1 cut(s) 49
BclI TGATCA 1 cut(s) 219
BfaI CTAG 1 cut(s) 120
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 2 cut(s) 414, 568
BlsI GCNGC 2 cut(s) 415, 569
Bme18I GGWCC 1 cut(s) 337
BmeRI GACNNNNNGTC 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 337, 433
BmiI GGNNCC 1 cut(s) 338
BmsI GCATC 2 cut(s) 256, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 206
Bse1I ACTGG 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 463
BseGI GGATG 6 cut(s) 84, 88, 143, 271, 382, 530
BseLI CCNNNNNNNGG 2 cut(s) 153, 206
BseMI GCAATG 1 cut(s) 463
BseNI ACTGG 1 cut(s) 446
BseXI GCAGC 1 cut(s) 425
BshFI GGCC 2 cut(s) 124, 435
BslI CCNNNNNNNGG 2 cut(s) 153, 206
BsnI GGCC 2 cut(s) 124, 435
Bsp143I GATC 4 cut(s) 102, 175, 219, 495
BspACI CCGC 6 cut(s) 5, 43, 150, 200, 454, 567
BspANI GGCC 2 cut(s) 124, 435
BspLI GGNNCC 1 cut(s) 338
BspPI GGATC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 463
BsrI ACTGG 1 cut(s) 446
BssMI GATC 4 cut(s) 102, 175, 219, 495
BstC8I GCNNGC 1 cut(s) 565
BstF5I GGATG 6 cut(s) 84, 88, 143, 271, 382, 530
BstKTI GATC 4 cut(s) 105, 178, 222, 498
BstMBI GATC 4 cut(s) 102, 175, 219, 495
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstV1I GCAGC 1 cut(s) 425
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 124, 435
BtsCI GGATG 6 cut(s) 84, 88, 143, 271, 382, 530
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 2 cut(s) 337, 558
Cac8I GCNNGC 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 337, 433
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 40, 423
CviAII CATG 1 cut(s) 284
CviJI RGCY 7 cut(s) 124, 247, 301, 323, 349, 416, 435
CviKI_1 RGCY 7 cut(s) 124, 247, 301, 323, 349, 416, 435
CviQI GTAC 2 cut(s) 40, 423
DpnI GATC 4 cut(s) 104, 177, 221, 497
DpnII GATC 4 cut(s) 102, 175, 219, 495
DriI GACNNNNNGTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 22
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 433
EcoRV GATATC 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 271
FaeI CATG 1 cut(s) 287
FaiI YATR 9 cut(s) 285, 305, 386, 388, 390, 401, 407, 477, 545
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 219
FblI GTMKAC 2 cut(s) 196, 555
Fnu4HI GCNGC 2 cut(s) 414, 568
FokI GGATG 6 cut(s) 91, 95, 130, 278, 389, 537
Fsp4HI GCNGC 2 cut(s) 414, 568
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 414, 568
HaeIII GGCC 2 cut(s) 124, 435
HgaI GACGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 287
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 193, 312
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 2 cut(s) 197, 556
Hpy188I TCNGA 2 cut(s) 102, 162
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 2 cut(s) 197, 556
Hpy99I CGWCG 3 cut(s) 139, 142, 190
HpyAV CCTTC 3 cut(s) 46, 484, 505
HpyCH4V TGCA 5 cut(s) 228, 269, 362, 413, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
Hsp92II CATG 1 cut(s) 287
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 4 cut(s) 102, 175, 219, 495
LpnPI CCDG 4 cut(s) 62, 214, 228, 459
Lsp1109I GCAGC 1 cut(s) 425
LweI GCATC 2 cut(s) 256, 278
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 254
MalI GATC 4 cut(s) 104, 177, 221, 497
MboI GATC 4 cut(s) 102, 175, 219, 495
MboII GAAGA 1 cut(s) 307
MfeI CAATTG 2 cut(s) 223, 534
MluCI AATT 5 cut(s) 112, 223, 235, 472, 534
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 4 cut(s) 119, 127, 157, 514
Mph1103I ATGCAT 1 cut(s) 271
MseI TTAA 2 cut(s) 276, 357
MspA1I CMGCKG 2 cut(s) 416, 567
MunI CAATTG 2 cut(s) 223, 534
MwoI GCNNNNNNNGC 1 cut(s) 512
NdeII GATC 4 cut(s) 102, 175, 219, 495
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 254
NsiI ATGCAT 1 cut(s) 271
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 2 cut(s) 415, 569
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PshBI ATTAAT 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 338
PspPI GGNCC 2 cut(s) 337, 433
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 41, 424
RsaNI GTAC 2 cut(s) 40, 423
SaqAI TTAA 2 cut(s) 276, 357
SatI GCNGC 2 cut(s) 414, 568
Sau3AI GATC 4 cut(s) 102, 175, 219, 495
Sau96I GGNCC 2 cut(s) 337, 433
SchI GAGTC 1 cut(s) 202
SetI ASST 5 cut(s) 51, 111, 211, 249, 418
SfaNI GCATC 2 cut(s) 256, 278
SinI GGWCC 1 cut(s) 337
Sse9I AATT 5 cut(s) 112, 223, 235, 472, 534
SsiI CCGC 6 cut(s) 5, 43, 150, 200, 454, 567
SspMI CTAG 1 cut(s) 120
TaqI TCGA 2 cut(s) 105, 308
TaqII GACCGA 1 cut(s) 29
TasI AATT 5 cut(s) 112, 223, 235, 472, 534
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 2 cut(s) 276, 357
Tru9I TTAA 2 cut(s) 276, 357
TscAI CASTG 2 cut(s) 337, 565
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 257, 485
TspRI CASTG 2 cut(s) 337, 565
VpaK11BI GGWCC 1 cut(s) 337
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 1 cut(s) 235
XmiI GTMKAC 2 cut(s) 196, 555
XspI CTAG 1 cut(s) 120
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.