Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000387

Physical Location & Seq

Genomic Coordinates Reverse (-)

20874906 .. 20875235

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG123600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCGGGTAAGACCGACTCGGTGTCGATTCGGGTGTCGTACCGCAACCTGAAGGATACGAAAGTTGAAATGATGGGGATGGATGATGAGCCTCATCATCGGATCGACCTCAATTCCTCTAGGCCGTCTCCGTCGCCGTCGTCGTCGTCCTCCGCTAGGGTTCCGAACGGGAACGGCGATCTTCCGCCGCCGCAGAGTCTACCGGTTCCTAATCAGAACACTCTGATGACTCTAATTCTCAGCTGTACGGTTGCCGCCGGTGTTCAGTTCGGTTGGGCTTTGCAGCTTTCGCTCTTAACTCCCTATATACAGGTTCGATTTTGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006950 GO:0008150 GO:0008515 GO:0008643 GO:0009611 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0022857 GO:0034219 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

109

Amino Acids

11.84

Weight (kDa)

7.83

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca	FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica	MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica	Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis	pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis	RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata	RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora	Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa	Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha	Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana	Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AciI	CCGC	7 cut(s)	5, 43, 153, 185, 188, 191, 255
AclWI	GGATC	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	41, 247
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	68
AhdI	GACNNNNNGTC	1 cut(s)	22
AluBI	AGCT	2 cut(s)	243, 286
AluI	AGCT	2 cut(s)	243, 286
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	283
AsiGI	ACCGGT	1 cut(s)	202
BaeI	ACNNNNGTAYC	2 cut(s)	48, 81
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	2 cut(s)	67, 73
BceAI	ACGGC	3 cut(s)	109, 121, 190
BciVI	GTATCC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	120, 156
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	4 cut(s)	188, 191, 255, 284
BlsI	GCNGC	4 cut(s)	189, 192, 256, 285
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	162, 207
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	2 cut(s)	202, 257
BseGI	GGATG	2 cut(s)	84, 88
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	295
BshFI	GGCC	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	203, 258
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	102, 178
BspACI	CCGC	7 cut(s)	5, 43, 153, 185, 188, 191, 255
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	162, 207
BspPI	GGATC	1 cut(s)	110
BsrFI	RCCGGY	2 cut(s)	202, 257
BssAI	RCCGGY	2 cut(s)	202, 257
BssMI	GATC	2 cut(s)	102, 178
Bst4CI	ACNGT	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	84, 88
BstKTI	GATC	2 cut(s)	105, 181
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	102, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	84, 88
Cfr10I	RCCGGY	2 cut(s)	202, 257
Csp6I	GTAC	2 cut(s)	40, 246
CspAI	ACCGGT	1 cut(s)	202
CviJI	RGCY	5 cut(s)	91, 124, 243, 278, 286
CviKI_1	RGCY	5 cut(s)	91, 124, 243, 278, 286
CviQI	GTAC	2 cut(s)	40, 246
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	104, 180
DpnII	GATC	2 cut(s)	102, 178
DriI	GACNNNNNGTC	1 cut(s)	22
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	132
FaiI	YATR	2 cut(s)	306, 308
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	188, 191, 255, 284
FokI	GGATG	2 cut(s)	91, 95
Fsp4HI	GCNGC	4 cut(s)	188, 191, 255, 284
FspBI	CTAG	2 cut(s)	120, 156
GluI	GCNGC	4 cut(s)	188, 191, 255, 284
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	203, 258
HinfI	GANTC	4 cut(s)	17, 28, 196, 229
HpaII	CCGG	2 cut(s)	203, 258
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	5 cut(s)	102, 165, 216, 225, 329
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	4 cut(s)	136, 142, 145, 148
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	102, 178
LpnPI	CCDG	4 cut(s)	62, 216, 271, 296
Lsp1109I	GCAGC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	120, 156
MalI	GATC	2 cut(s)	104, 180
MboI	GATC	2 cut(s)	102, 178
MboII	GAAGA	1 cut(s)	173
MluCI	AATT	2 cut(s)	112, 234
MlyI	GAGTC	3 cut(s)	11, 205, 223
MnlI	CCTC	4 cut(s)	102, 119, 127, 160
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	2 cut(s)	203, 258
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	2 cut(s)	102, 178
NlaIV	GGNNCC	2 cut(s)	162, 207
PcsI	WCGNNNNNNNCGW	2 cut(s)	140, 174
PfeI	GAWTC	1 cut(s)	28
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	189, 192, 256, 285
PleI	GAGTC	3 cut(s)	11, 204, 223
PpsI	GAGTC	3 cut(s)	11, 204, 223
PspN4I	GGNNCC	2 cut(s)	162, 207
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	2 cut(s)	41, 247
RsaNI	GTAC	2 cut(s)	40, 246
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	4 cut(s)	188, 191, 255, 284
Sau3AI	GATC	2 cut(s)	102, 178
SchI	GAGTC	3 cut(s)	11, 205, 223
SetI	ASST	5 cut(s)	51, 111, 245, 288, 315
SgrAI	CRCCGGYG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	112, 234
SsiI	CCGC	7 cut(s)	5, 43, 153, 185, 188, 191, 255
SspMI	CTAG	2 cut(s)	120, 156
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	3 cut(s)	26, 105, 316
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	112, 234
TauI	GCSGC	3 cut(s)	190, 193, 257
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseI	GCWGC	1 cut(s)	283
TspGWI	ACGGA	1 cut(s)	120
XagI	CCTNNNNNAGG	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	2 cut(s)	120, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.