Rroxscaffold_5G00371680

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000387
Physical Location & Seq
Reverse (-)
53254969 .. 53258622
3654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371680.1

Sequence Viewer

Length: 210 bp
ATGCAGAGAAGTTTTACTCTGAGGCTGACCAACAGCAGCATGAAATCAATGGCCTTGTTGTGCCAGTTATCCGCAATGCTGATAAAGATGAAATGTGGTGAGATAGAGGAGATCAATTTGCTTGCAAAGAAGGCAAATGAGGGACGTCTTTCAATTGATGATATGGCTGGAGGTTCATTTCCAATGGTGGATTTTATGGAAGCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

69

Amino Acids

7.66

Weight (kDa)

6.14

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 208
AatII GACGTC 1 cut(s) 148
AciI CCGC 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 145
AgsI TTSAA 1 cut(s) 153
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 110
BbvI GCAGC 1 cut(s) 48
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 48
BshFI GGCC 1 cut(s) 53
BslFI GGGAC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 1 cut(s) 64
BssMI GATC 1 cut(s) 111
BssNI GRCGYC 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 20
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 123
CviAII CATG 1 cut(s) 40
CviJI RGCY 4 cut(s) 25, 53, 167, 203
CviKI_1 RGCY 4 cut(s) 25, 53, 167, 203
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
FaeI CATG 1 cut(s) 43
FaiI YATR 4 cut(s) 41, 164, 197, 208
FaqI GGGAC 1 cut(s) 156
FatI CATG 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 1 cut(s) 43
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 4, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 1 cut(s) 43
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 2 cut(s) 77, 153
Lsp1109I GCAGC 1 cut(s) 48
MaeII ACGT 1 cut(s) 145
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MfeI CAATTG 1 cut(s) 153
MluCI AATT 2 cut(s) 115, 153
MnlI CCTC 4 cut(s) 15, 100, 133, 164
MunI CAATTG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 1 cut(s) 111
NlaIII CATG 1 cut(s) 43
PkrI GCNGC 1 cut(s) 38
PsiI TTATAA 1 cut(s) 208
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 1 cut(s) 111
SetI ASST 2 cut(s) 148, 175
SgeI CNNG 5 cut(s) 52, 67, 76, 134, 180
Sse9I AATT 2 cut(s) 115, 153
SsiI CCGC 1 cut(s) 72
TaiI ACGT 1 cut(s) 148
TasI AATT 2 cut(s) 115, 153
TseI GCWGC 1 cut(s) 36
TspDTI ATGAA 3 cut(s) 56, 104, 165
ZraI GACGTC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.