Rmu_ssc0000174.1_g000008

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000174.1
OG0000387
Physical Location & Seq
Reverse (-)
25278 .. 28042
2765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000174.1_g000008.1.cds

Sequence Viewer

Length: 606 bp
atggcgggtaagacccactcagtgttgattcgggtgtcgtaccgcaacctgaaggatacgaaagttgaaatgatggggatggatgatgagcctcatcatcggattgacctcaattcctctaggccgtctccatcgccgtcgtcatcgtcctccgcttgggttccgaacggaatggtgaccttccaccgccgcaaagtctactggaaaaatttgatgaagcttcgttgtgacttcaaggatgcatatgttgagaagcatggggtcaagttggggcttatgtcgagattcatcaaggctgttgtcaatggggtccaaaatcagcctactattaatgcagtcattgatggggatgatatcatatatagagattacatagatataagtgcagctgtgggtactccaaagggccttgttgtgccagttatccgcaatgctgataagatgaattgtggtgagatcgagaaggagatcaattcgcttgcaaagaaggcaaatgagggacgtctttcaattgatgatatggctggaggttcatttacaatatccaatggtggattttatggaagtcttatgagtacccccatcatcaactctcctcaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

201

Amino Acids

22.19

Weight (kDa)

9.18

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 198
AciI CCGC 6 cut(s) 5, 43, 153, 187, 190, 427
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 502
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 3 cut(s) 41, 397, 577
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 3 cut(s) 68, 235, 510
AluBI AGCT 2 cut(s) 220, 389
AluI AGCT 2 cut(s) 220, 389
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 2 cut(s) 122, 406
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 208
AseI ATTAAT 1 cut(s) 330
AspS9I GGNCC 2 cut(s) 310, 406
AsuHPI GGTGA 2 cut(s) 187, 464
AvaII GGWCC 1 cut(s) 310
AxyI CCTNAGG 1 cut(s) 597
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BbvI GCAGC 1 cut(s) 398
BccI CCATC 5 cut(s) 67, 73, 139, 338, 590
BceAI ACGGC 2 cut(s) 109, 121
BciVI GTATCC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 120
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 2 cut(s) 190, 387
BlsI GCNGC 2 cut(s) 191, 388
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 310, 406
BmiI GGNNCC 2 cut(s) 162, 311
BmsI GCATC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 546
BsaHI GRCGYC 1 cut(s) 502
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 2 cut(s) 206, 419
Bse21I CCTNAGG 1 cut(s) 597
Bse3DI GCAATG 1 cut(s) 436
BseGI GGATG 4 cut(s) 84, 88, 244, 355
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 206, 419
BseRI GAGGAG 1 cut(s) 585
BseXI GCAGC 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 2 cut(s) 124, 408
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 2 cut(s) 124, 408
Bsp143I GATC 2 cut(s) 456, 468
BspACI CCGC 6 cut(s) 5, 43, 153, 187, 190, 427
BspANI GGCC 2 cut(s) 124, 408
BspCNI CTCAG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 162, 311
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 2 cut(s) 206, 419
BssMI GATC 2 cut(s) 456, 468
BssNI GRCGYC 1 cut(s) 502
BstACI GRCGYC 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 2 cut(s) 19, 597
BstEII GGTNACC 1 cut(s) 175
BstF5I GGATG 4 cut(s) 84, 88, 244, 355
BstKTI GATC 2 cut(s) 459, 471
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 456, 468
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstPI GGTNACC 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 398
Bsu36I CCTNAGG 1 cut(s) 597
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 124, 408
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 4 cut(s) 84, 88, 244, 355
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 480
Cfr13I GGNCC 2 cut(s) 310, 406
Csp6I GTAC 3 cut(s) 40, 396, 576
CviAII CATG 1 cut(s) 257
CviJI RGCY 9 cut(s) 91, 124, 220, 274, 296, 322, 389, 408, 524
CviKI_1 RGCY 9 cut(s) 91, 124, 220, 274, 296, 322, 389, 408, 524
CviQI GTAC 3 cut(s) 40, 396, 576
DdeI CTNAG 2 cut(s) 19, 597
DpnI GATC 2 cut(s) 458, 470
DpnII GATC 2 cut(s) 456, 468
DraIII CACNNNGTG 1 cut(s) 22
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 597
Eco91I GGTNACC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 406
EcoO65I GGTNACC 1 cut(s) 175
EcoRV GATATC 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 1 cut(s) 260
FaqI GGGAC 1 cut(s) 513
FatI CATG 1 cut(s) 256
FauNDI CATATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 190, 387
FokI GGATG 4 cut(s) 91, 95, 251, 362
Fsp4HI GCNGC 2 cut(s) 190, 387
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 190, 387
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 2 cut(s) 124, 408
Hin1I GRCGYC 1 cut(s) 502
Hin1II CATG 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 28, 285
HphI GGTGA 2 cut(s) 187, 464
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 102, 165
Hpy188III TCNNGA 2 cut(s) 282, 460
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 4 cut(s) 46, 190, 457, 481
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 4 cut(s) 242, 335, 386, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 2 cut(s) 19, 597
HpySE526I ACGT 1 cut(s) 502
Hsp92I GRCGYC 1 cut(s) 502
Hsp92II CATG 1 cut(s) 260
Kzo9I GATC 2 cut(s) 456, 468
LpnPI CCDG 5 cut(s) 62, 187, 432, 510, 584
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 120
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 2 cut(s) 175, 227
MalI GATC 2 cut(s) 458, 470
MboI GATC 2 cut(s) 456, 468
MfeI CAATTG 1 cut(s) 510
MluCI AATT 5 cut(s) 112, 208, 445, 472, 510
MnlI CCTC 7 cut(s) 102, 119, 127, 160, 490, 521, 606
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 389
MunI CAATTG 1 cut(s) 510
MwoI GCNNNNNNNGC 1 cut(s) 488
NdeI CATATG 1 cut(s) 244
NdeII GATC 2 cut(s) 456, 468
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 2 cut(s) 162, 311
NmuCI GTSAC 2 cut(s) 175, 227
NsiI ATGCAT 1 cut(s) 244
PfeI GAWTC 2 cut(s) 28, 285
PkrI GCNGC 2 cut(s) 191, 388
PshBI ATTAAT 1 cut(s) 330
PspEI GGTNACC 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 162, 311
PspPI GGNCC 2 cut(s) 310, 406
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 3 cut(s) 41, 397, 577
RsaNI GTAC 3 cut(s) 40, 396, 576
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 2 cut(s) 190, 387
Sau3AI GATC 2 cut(s) 456, 468
Sau96I GGNCC 2 cut(s) 310, 406
SetI ASST 8 cut(s) 51, 111, 182, 222, 391, 505, 532, 603
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 1 cut(s) 310
Sse9I AATT 5 cut(s) 112, 208, 445, 472, 510
SsiI CCGC 6 cut(s) 5, 43, 153, 187, 190, 427
SspMI CTAG 1 cut(s) 120
TaiI ACGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 281, 459
TasI AATT 5 cut(s) 112, 208, 445, 472, 510
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 2 cut(s) 28, 285
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 2 cut(s) 175, 227
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 2 cut(s) 175, 227
TspDTI ATGAA 4 cut(s) 230, 277, 458, 522
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 310
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 1 cut(s) 120
ZraI GACGTC 1 cut(s) 503
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.