Rmu_co8099772.1_g000001

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8099772.1
OG0000387
Physical Location & Seq
Forward (+)
1 .. 586
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8099772.1_g000001.1.cds

Sequence Viewer

Length: 323 bp
tttgttcacaggctgctgtcagtgggctccaaaatcagcctactattaatgcagtcattgatggggatgatatcatatatagagattacatagatataagtgtagccgtgggtactccaaagggccttgttgtgccagttattcgtaatgctgataagatgaattgtgctgagatagagaaggagatcaatttcctcgcaaagaaggcaaatgagggacgtctttcaatcgatgagatggctggaggttcatttacaatatccaatggtggagtttatggaagccttataagtacccccatcatcaaccctcctcaggtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

106

Amino Acids

11.19

Weight (kDa)

4.55

Isoelectric Point (pI)

27.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 289
AatII GACGTC 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 2 cut(s) 114, 294
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 1 cut(s) 227
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 13
AseI ATTAAT 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 123
AxyI CCTNAGG 1 cut(s) 314
BanII GRGCYC 1 cut(s) 29
BccI CCATC 3 cut(s) 55, 231, 307
BceAI ACGGC 1 cut(s) 91
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse1I ACTGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 314
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 302
BshFI GGCC 1 cut(s) 125
BshVI ATCGAT 1 cut(s) 230
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 185
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 185
BssNI GRCGYC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 170, 314
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 1 cut(s) 188
BstMBI GATC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 230
Bsu36I CCTNAGG 1 cut(s) 314
BsuRI GGCC 1 cut(s) 125
BsuTUI ATCGAT 1 cut(s) 230
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 123
ClaI ATCGAT 1 cut(s) 230
Csp6I GTAC 2 cut(s) 113, 293
CviJI RGCY 7 cut(s) 13, 27, 39, 106, 125, 241, 284
CviKI_1 RGCY 7 cut(s) 13, 27, 39, 106, 125, 241, 284
CviQI GTAC 2 cut(s) 113, 293
DdeI CTNAG 2 cut(s) 170, 314
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 29
Eco32I GATATC 1 cut(s) 72
Eco81I CCTNAGG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 123
EcoRV GATATC 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 29
FaiI YATR 7 cut(s) 76, 78, 80, 91, 97, 278, 289
FaqI GGGAC 1 cut(s) 230
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 322
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 174, 198
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 2 cut(s) 170, 314
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 219
Kzo9I GATC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 3 cut(s) 149, 227, 301
MaeII ACGT 1 cut(s) 219
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 2 cut(s) 162, 189
MnlI CCTC 5 cut(s) 205, 207, 238, 320, 323
MseI TTAA 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 1 cut(s) 185
NlaIV GGNNCC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 15
PshBI ATTAAT 1 cut(s) 47
PsiI TTATAA 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 123
RsaI GTAC 2 cut(s) 114, 294
RsaNI GTAC 2 cut(s) 113, 293
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 123
SduI GDGCHC 1 cut(s) 29
SetI ASST 3 cut(s) 222, 249, 320
SgeI CNNG 6 cut(s) 22, 120, 139, 148, 208, 254
Sse9I AATT 2 cut(s) 162, 189
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 230
TasI AATT 2 cut(s) 162, 189
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 175, 239
TspRI CASTG 1 cut(s) 27
VspI ATTAAT 1 cut(s) 47
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.