Rmu_co8403685.1_g000001

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8403685.1
OG0000387
Physical Location & Seq
Reverse (-)
15 .. 1292
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8403685.1_g000001.1.cds

Sequence Viewer

Length: 578 bp
agcctggagaccgggtggaagttgatgaaccgattgctcaaatagaaacagataaggtcacaatcgatgttgctagtcctgaatccggtgtaattgagaagtttgtagccaatgaaggggatactgtggaaccaggcaccaagattgctatcatactaaagtccggtgaaggtgtatcccatgtgggtccatctgagaaaacactggaggaagctattccacaaccagcttccccggtagaaacaattagcaagaatgaaacatctaaagttgaaataactccagttaccgataagcctaaaggaccctccccaccatctcccaaaccctcagctcaagaacctcagctcccccctaaggaacgagaaagacgaattcctatgacaacgcttcggaaacgaattgctaaaagattgaaagattcacagaacacatatgcaatgcttacaacattcaatgaagttgatatgacaaatttgatgaatcttcgttctgacttcaaggatgcatttgttgagaagcatggggtcaagttggggcttatgtcgggattcatcaaggtacatggtgctaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

191

Amino Acids

20.83

Weight (kDa)

6.03

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 136
AcsI RAATTY 2 cut(s) 374, 474
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 3 cut(s) 85, 116, 357
AgsI TTSAA 4 cut(s) 274, 417, 456, 501
AjnI CCWGG 2 cut(s) 3, 132
AloI GAACNNNNNNTCC 2 cut(s) 332, 364
AluBI AGCT 4 cut(s) 214, 229, 334, 348
AluI AGCT 4 cut(s) 214, 229, 334, 348
Alw26I GTCTC 1 cut(s) 2
ApoI RAATTY 2 cut(s) 374, 474
Asp700I GAANNNNTTC 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 187, 304
AsuC2I CCSGG 2 cut(s) 13, 235
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 2 cut(s) 187, 304
AxyI CCTNAGG 1 cut(s) 356
BanI GGYRCC 1 cut(s) 136
BbvCI CCTCAGC 2 cut(s) 330, 344
BccI CCATC 2 cut(s) 198, 324
BciT130I CCWGG 2 cut(s) 5, 134
BciVI GTATCC 2 cut(s) 114, 186
BcnI CCSGG 2 cut(s) 13, 235
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 74
BfuI GTATCC 2 cut(s) 114, 186
Bme1390I CCNGG 4 cut(s) 5, 13, 134, 235
Bme18I GGWCC 2 cut(s) 187, 304
BmgT120I GGNCC 2 cut(s) 187, 304
BmiI GGNNCC 4 cut(s) 131, 138, 188, 306
BmrFI CCNGG 4 cut(s) 5, 13, 134, 235
BmsI GCATC 1 cut(s) 495
BpmI CTGGAG 3 cut(s) 26, 226, 266
Bpu10I CCTNAGC 2 cut(s) 330, 344
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 2 cut(s) 13, 235
Bsa29I ATCGAT 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 1 cut(s) 233
BsaWI WCCGGW 2 cut(s) 85, 163
BsaXI ACNNNNNCTCC 3 cut(s) 29, 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 116, 357
Bse1I ACTGG 2 cut(s) 209, 283
Bse21I CCTNAGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 446
Bse8I GATNNNNATC 1 cut(s) 148
BseBI CCWGG 2 cut(s) 5, 134
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 1 cut(s) 510
BseJI GATNNNNATC 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 85, 116, 357
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 185, 344, 358
BseNI ACTGG 2 cut(s) 209, 283
BshNI GGYRCC 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 65
BsiSI CCGG 4 cut(s) 12, 86, 164, 235
BslI CCNNNNNNNGG 3 cut(s) 85, 116, 357
BsmAI GTCTC 1 cut(s) 2
Bso31I GGTCTC 1 cut(s) 2
BspCNI CTCAG 3 cut(s) 186, 343, 357
BspDI ATCGAT 1 cut(s) 65
BspLI GGNNCC 4 cut(s) 131, 138, 188, 306
BspT107I GGYRCC 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 2
BsrDI GCAATG 1 cut(s) 446
BsrI ACTGG 2 cut(s) 209, 283
BssECI CCNNGG 1 cut(s) 233
Bst2UI CCWGG 2 cut(s) 5, 134
Bst4CI ACNGT 1 cut(s) 126
BstDEI CTNAG 4 cut(s) 194, 330, 344, 356
BstF5I GGATG 1 cut(s) 510
BstMAI GTCTC 1 cut(s) 2
BstNI CCWGG 2 cut(s) 5, 134
BstSCI CCNGG 4 cut(s) 3, 11, 132, 233
Bsu15I ATCGAT 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 356
BsuI GTATCC 2 cut(s) 114, 186
BsuTUI ATCGAT 1 cut(s) 65
BtsCI GGATG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 187, 304
ClaI ATCGAT 1 cut(s) 65
Csp6I GTAC 1 cut(s) 562
CviAII CATG 3 cut(s) 181, 523, 565
CviJI RGCY 8 cut(s) 3, 109, 214, 229, 297, 334, 348, 540
CviKI_1 RGCY 8 cut(s) 3, 109, 214, 229, 297, 334, 348, 540
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 4 cut(s) 194, 330, 344, 356
Eco31I GGTCTC 1 cut(s) 2
Eco47I GGWCC 2 cut(s) 187, 304
Eco81I CCTNAGG 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 3, 132
EcoT22I ATGCAT 1 cut(s) 510
FaeI CATG 3 cut(s) 184, 526, 568
FaiI YATR 9 cut(s) 154, 182, 382, 435, 437, 469, 524, 544, 566
FatI CATG 3 cut(s) 180, 522, 564
FauNDI CATATG 1 cut(s) 435
FokI GGATG 1 cut(s) 517
FspBI CTAG 1 cut(s) 74
GsuI CTGGAG 3 cut(s) 26, 226, 266
HapII CCGG 4 cut(s) 12, 86, 164, 235
Hin1II CATG 3 cut(s) 184, 526, 568
HinfI GANTC 4 cut(s) 82, 421, 483, 551
HpaII CCGG 4 cut(s) 12, 86, 164, 235
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 195, 395, 495
Hpy188III TCNNGA 3 cut(s) 79, 337, 548
HpyAV CCTTC 2 cut(s) 109, 163
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 439, 508
HpyF3I CTNAG 4 cut(s) 194, 330, 344, 356
Hsp92II CATG 3 cut(s) 184, 526, 568
LmnI GCTCC 1 cut(s) 353
LweI GCATC 1 cut(s) 495
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 57, 285
MboII GAAGA 1 cut(s) 478
MluCI AATT 5 cut(s) 92, 245, 374, 401, 474
MnlI CCTC 4 cut(s) 201, 318, 339, 353
Mph1103I ATGCAT 1 cut(s) 510
MroXI GAANNNNTTC 1 cut(s) 215
MspI CCGG 4 cut(s) 12, 86, 164, 235
MspR9I CCNGG 4 cut(s) 5, 13, 134, 235
MvaI CCWGG 2 cut(s) 5, 134
NciI CCSGG 2 cut(s) 13, 235
NdeI CATATG 1 cut(s) 435
NlaIII CATG 3 cut(s) 184, 526, 568
NlaIV GGNNCC 4 cut(s) 131, 138, 188, 306
NmuCI GTSAC 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 510
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 4 cut(s) 82, 421, 483, 551
PpuMI RGGWCCY 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 304
Psp6I CCWGG 2 cut(s) 3, 132
PspGI CCWGG 2 cut(s) 3, 132
PspN4I GGNNCC 4 cut(s) 131, 138, 188, 306
PspPI GGNCC 2 cut(s) 187, 304
PspPPI RGGWCCY 1 cut(s) 304
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
Sau96I GGNCC 2 cut(s) 187, 304
ScrFI CCNGG 4 cut(s) 5, 13, 134, 235
SetI ASST 8 cut(s) 59, 174, 216, 231, 336, 345, 350, 563
SfaNI GCATC 1 cut(s) 495
SinI GGWCC 2 cut(s) 187, 304
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 5 cut(s) 92, 245, 374, 401, 474
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 4 cut(s) 3, 11, 132, 233
TaaI ACNGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 65
TasI AATT 5 cut(s) 92, 245, 374, 401, 474
TfiI GAWTC 4 cut(s) 82, 421, 483, 551
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 6 cut(s) 41, 128, 272, 473, 496, 543
TspRI CASTG 1 cut(s) 209
VpaK11BI GGWCC 2 cut(s) 187, 304
XapI RAATTY 2 cut(s) 374, 474
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.