Rorug03G0343200

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
41354459 .. 41355052
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0343200.1

Sequence Viewer

Length: 594 bp
ATGTTGCTATGGTCAATTTGGAAGAATAGAAATGAAATGGTGTGGGAAAATTCTTCTAAACCTCCATTACAGCTGGTGACATTATCCACAGGGTGGTGGGAAGAATATAGAGCTAATCATTCTAAACATTTATTTGTGAATACTGGGGGTGTTATTAGATGGAAGAAACCACCGATAGGATTCATAAAACTAAATGTTGATGAGGCATTTTATTCTACTTCTGCTAAGGCTGGTCTAGGAGGAGTGTTTAGGGATTTTGAGGGGAGCTTTATGGGTGGATTTTTACATAGCCAAGAGAATGTGTCTTCTGCTAAACATGCTAAACTCCTTGCATGTTTTCATAGGGTTCAACTAGCTAGGGCAAAAGGCTTCTTATCGATTCGGATTGAAACTGATTGCTTGGAGTTGATTGATGTTGTTTCTAATAGTGCTGCAGATTATTCTGATTTGGGTTTTCTTGTGGAGGACCCGAAACAAAGTTTGGTTTTGCCCTCCAATGCTTCTCTAGTTCATGCTAGACAATCTGGCAATCATGTGGCTCATCTACTTGCACAGTTAGCTAGAAATATAGATATAGTCGGTCTTTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

22.05

Weight (kDa)

8.55

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 65 - 186 2.5e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 93
AcsI RAATTY 1 cut(s) 49
AdeI CACNNNGTG 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 93, 176
AgsI TTSAA 2 cut(s) 350, 389
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AluBI AGCT 5 cut(s) 73, 113, 267, 356, 560
AluI AGCT 5 cut(s) 73, 113, 267, 356, 560
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 466
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 418
BccI CCATC 1 cut(s) 153
BfaI CTAG 6 cut(s) 236, 353, 357, 506, 516, 561
BfmI CTRYAG 1 cut(s) 432
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme18I GGWCC 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 466
BmiI GGNNCC 1 cut(s) 468
BmrI ACTGGG 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 377
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 176
Bse1I ACTGG 1 cut(s) 148
BseCI ATCGAT 1 cut(s) 377
BseLI CCNNNNNNNGG 2 cut(s) 93, 176
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 418
BshVI ATCGAT 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 93, 176
BspDI ATCGAT 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 468
BspMAI CTGCAG 1 cut(s) 436
BsrI ACTGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 555
BstDEI CTNAG 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 317, 557
BstNSI RCATGY 2 cut(s) 320, 336
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 297
Bsu15I ATCGAT 1 cut(s) 377
BsuTUI ATCGAT 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 466
ClaI ATCGAT 1 cut(s) 377
CviAII CATG 4 cut(s) 317, 333, 512, 533
CviJI RGCY 9 cut(s) 73, 113, 230, 267, 291, 356, 369, 539, 560
CviKI_1 RGCY 9 cut(s) 73, 113, 230, 267, 291, 356, 369, 539, 560
DdeI CTNAG 1 cut(s) 225
DraIII CACNNNGTG 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 466
EcoO109I RGGNCCY 1 cut(s) 466
FaeI CATG 4 cut(s) 320, 336, 515, 536
FatI CATG 4 cut(s) 316, 332, 511, 532
Fnu4HI GCNGC 1 cut(s) 432
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 6 cut(s) 236, 353, 357, 506, 516, 561
GluI GCNGC 1 cut(s) 432
Hin1II CATG 4 cut(s) 320, 336, 515, 536
HinfI GANTC 2 cut(s) 180, 379
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 384, 445
HpyCH4III ACNGT 1 cut(s) 555
HpyCH4V TGCA 3 cut(s) 332, 434, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 557
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 4 cut(s) 320, 336, 515, 536
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 5 cut(s) 59, 75, 129, 216, 510
Lsp1109I GCAGC 1 cut(s) 418
MaeI CTAG 6 cut(s) 236, 353, 357, 506, 516, 561
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 5 cut(s) 34, 45, 113, 175, 297
MluCI AATT 2 cut(s) 15, 49
MnlI CCTC 6 cut(s) 72, 196, 233, 253, 457, 502
MspA1I CMGCKG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 317, 557
NlaIII CATG 4 cut(s) 320, 336, 515, 536
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 2 cut(s) 320, 336
PfeI GAWTC 2 cut(s) 180, 379
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 1 cut(s) 433
PpuMI RGGWCCY 1 cut(s) 466
Psp5II RGGWCCY 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 466
PspPPI RGGWCCY 1 cut(s) 466
PstI CTGCAG 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 73
SatI GCNGC 1 cut(s) 432
Sau96I GGNCC 1 cut(s) 466
SetI ASST 6 cut(s) 64, 75, 115, 269, 358, 562
SfcI CTRYAG 1 cut(s) 432
SinI GGWCC 1 cut(s) 466
Sse9I AATT 2 cut(s) 15, 49
SspMI CTAG 6 cut(s) 236, 353, 357, 506, 516, 561
TaaI ACNGT 1 cut(s) 555
TaqI TCGA 1 cut(s) 377
TaqII GACCGA 1 cut(s) 569
TasI AATT 2 cut(s) 15, 49
TfiI GAWTC 2 cut(s) 180, 379
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 4 cut(s) 48, 172, 329, 500
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 466
XapI RAATTY 1 cut(s) 49
XceI RCATGY 2 cut(s) 320, 336
XspI CTAG 6 cut(s) 236, 353, 357, 506, 516, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.