Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000387

Physical Location & Seq

Genomic Coordinates Reverse (-)

7627503 .. 7629772

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCAGGTAAGACCGACTCGGTGTCGATTCGGGTGTCGTACCGCAACCTGAAGGATACGAAAGTTAAAATGATGGGGATGGATGATGAGCCTCATCATCGGATCGACCTCAATTCCTCTAGGCAATCTCCATCGCCGTCGTCGTCCTCCGCTACGGTTCCGAACGGGAACAGCGATCGTCCGCAGCCACAAAGTCTACCGGTTCCTAATCAGAACACTCTGATGACTCTAATTCTCAACTGTATGGTTGCCGCCGGTGTTCAGTTCGGTTGGGCTTTGCAGCTTTCGCTCTTAACTCCCTATATACAGGGCGACGTGGGAGACTGGGAGGTGACCAGATTCAATTTAAGCAAAGGGAGAAAGGCAGAAAACCAACGCATAAGCAAATCCATACCTGTTCCCTCTGAAGATTTTGCACTTTCGGGTGAGTATAGGTCATTGTTGGTGGATAACTTTCATCCTCTAGAAGGTATTCCTGTAATCAATTGCAGGACAAATTTGATGAAGCTTCGTTGTGACTTCAAGGATGCATATGTTGAGAAGCATAGGGTCAAGTTGGGGCTTATGTCGAGATTCATCAAGGCTGTTGTCAGTGGGGTCCAAAATCAGCCTACCATTAATGTAGTCATTGATGGGATGATATCATATATAGAGATTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006950 GO:0008150 GO:0008515 GO:0008643 GO:0009611 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0022857 GO:0034219 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

220

Amino Acids

24.48

Weight (kDa)

8.99

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca	FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica	MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica	Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis	pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis	RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata	RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora	Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa	Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha	Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana	Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	196
AciI	CCGC	4 cut(s)	43, 150, 182, 252
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	2 cut(s)	71, 426
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgeI	ACCGGT	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	343, 523
AhdI	GACNNNNNGTC	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	316
AluBI	AGCT	2 cut(s)	283, 508
AluI	AGCT	2 cut(s)	283, 508
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	184, 280
ApoI	RAATTY	1 cut(s)	496
AseI	ATTAAT	1 cut(s)	618
AsiGI	ACCGGT	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	2 cut(s)	343, 437
AvaII	GGWCC	1 cut(s)	598
BaeI	ACNNNNGTAYC	2 cut(s)	48, 81
BbvI	GCAGC	2 cut(s)	196, 292
BccI	CCATC	4 cut(s)	67, 73, 139, 626
BceAI	ACGGC	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	120, 464
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	3 cut(s)	185, 252, 281
BlsI	GCNGC	3 cut(s)	186, 253, 282
Bme18I	GGWCC	1 cut(s)	598
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	3 cut(s)	159, 204, 599
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse118I	RCCGGY	2 cut(s)	199, 254
Bse1I	ACTGG	1 cut(s)	329
BseGI	GGATG	5 cut(s)	84, 88, 457, 532, 642
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	196, 292
Bsh1285I	CGRYCG	1 cut(s)	178
BshTI	ACCGGT	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	200, 255
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	102, 175
BspACI	CCGC	4 cut(s)	43, 150, 182, 252
BspLI	GGNNCC	3 cut(s)	159, 204, 599
BspPI	GGATC	1 cut(s)	110
BsrFI	RCCGGY	2 cut(s)	199, 254
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	2 cut(s)	199, 254
BssMI	GATC	2 cut(s)	102, 175
Bst4CI	ACNGT	2 cut(s)	157, 242
BstEII	GGTNACC	1 cut(s)	331
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	5 cut(s)	84, 88, 457, 532, 642
BstKTI	GATC	2 cut(s)	105, 178
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	2 cut(s)	102, 175
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstPI	GGTNACC	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	196, 292
BsuI	GTATCC	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	5 cut(s)	84, 88, 457, 532, 642
BtsIMutI	CAGTG	1 cut(s)	598
Cfr10I	RCCGGY	2 cut(s)	199, 254
Cfr13I	GGNCC	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	40
CspAI	ACCGGT	1 cut(s)	199
CviJI	RGCY	8 cut(s)	91, 187, 275, 283, 508, 562, 584, 610
CviKI_1	RGCY	8 cut(s)	91, 187, 275, 283, 508, 562, 584, 610
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	2 cut(s)	104, 177
DpnII	GATC	2 cut(s)	102, 175
DriI	GACNNNNNGTC	1 cut(s)	22
Eam1105I	GACNNNNNGTC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	71, 426
Eco91I	GGTNACC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoO65I	GGTNACC	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	642
EcoT22I	ATGCAT	1 cut(s)	532
FauNDI	CATATG	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	185, 252, 281
FokI	GGATG	5 cut(s)	91, 95, 444, 539, 649
Fsp4HI	GCNGC	3 cut(s)	185, 252, 281
FspBI	CTAG	2 cut(s)	120, 464
GluI	GCNGC	3 cut(s)	185, 252, 281
HapII	CCGG	2 cut(s)	200, 255
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	5 cut(s)	17, 28, 226, 339, 573
HpaII	CCGG	2 cut(s)	200, 255
HphI	GGTGA	2 cut(s)	343, 437
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	5 cut(s)	102, 162, 213, 222, 406
Hpy188III	TCNNGA	2 cut(s)	464, 570
Hpy8I	GTNNAC	1 cut(s)	197
Hpy99I	CGWCG	3 cut(s)	142, 145, 317
HpyAV	CCTTC	2 cut(s)	46, 461
HpyCH4III	ACNGT	2 cut(s)	157, 242
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	280, 416, 489, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	102, 175
LpnPI	CCDG	9 cut(s)	62, 213, 268, 293, 310, 349, 408, 475, 489
Lsp1109I	GCAGC	2 cut(s)	196, 292
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	120, 464
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	331, 515
MalI	GATC	2 cut(s)	104, 177
MboI	GATC	2 cut(s)	102, 175
MboII	GAAGA	1 cut(s)	419
MfeI	CAATTG	1 cut(s)	484
MluCI	AATT	5 cut(s)	112, 231, 343, 484, 496
MlyI	GAGTC	2 cut(s)	11, 220
MnlI	CCTC	7 cut(s)	102, 119, 127, 157, 322, 412, 471
Mph1103I	ATGCAT	1 cut(s)	532
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	4 cut(s)	66, 293, 347, 618
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	2 cut(s)	200, 255
MunI	CAATTG	1 cut(s)	484
MwoI	GCNNNNNNNGC	1 cut(s)	286
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	2 cut(s)	102, 175
NlaIV	GGNNCC	3 cut(s)	159, 204, 599
NmuCI	GTSAC	2 cut(s)	331, 515
NsiI	ATGCAT	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	2 cut(s)	140, 171
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	28, 339, 573
PinAI	ACCGGT	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	186, 253, 282
Ple19I	CGATCG	1 cut(s)	178
PleI	GAGTC	2 cut(s)	11, 220
PpsI	GAGTC	2 cut(s)	11, 220
PshBI	ATTAAT	1 cut(s)	618
PspEI	GGTNACC	1 cut(s)	331
PspN4I	GGNNCC	3 cut(s)	159, 204, 599
PspPI	GGNCC	1 cut(s)	598
PvuI	CGATCG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	4 cut(s)	66, 293, 347, 618
SatI	GCNGC	3 cut(s)	185, 252, 281
Sau3AI	GATC	2 cut(s)	102, 175
Sau96I	GGNCC	1 cut(s)	598
SchI	GAGTC	2 cut(s)	11, 220
SfaNI	GCATC	1 cut(s)	517
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	5 cut(s)	112, 231, 343, 484, 496
SsiI	CCGC	4 cut(s)	43, 150, 182, 252
SspMI	CTAG	2 cut(s)	120, 464
TaaI	ACNGT	2 cut(s)	157, 242
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	26, 105, 569
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	5 cut(s)	112, 231, 343, 484, 496
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	28, 339, 573
Tru1I	TTAA	4 cut(s)	66, 293, 347, 618
Tru9I	TTAA	4 cut(s)	66, 293, 347, 618
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	2 cut(s)	331, 515
TseI	GCWGC	2 cut(s)	184, 280
Tsp45I	GTSAC	2 cut(s)	331, 515
TspDTI	ATGAA	3 cut(s)	446, 518, 565
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	598
VspI	ATTAAT	1 cut(s)	618
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	1 cut(s)	496
XbaI	TCTAGA	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	120, 464
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.