Rroxscaffold_3G00249890

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000387
Physical Location & Seq
Forward (+)
43644078 .. 43644815
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249890.1

Sequence Viewer

Length: 267 bp
ATGAAGCTTCGTTGTGACTTCAAGGATGCATCTGTTGAGAAGCATGGGGTCAAGTTGGGGCTTATGTCGAGATTCATCAAGTTTATCCGCAATGCTAGTAAGATGAATTGTGGTGAGATTGAGAAGGAGATCAATTCGCTTGCAAAGAAGGCAAATGAGGGACGCCTTTCAATTGATGATATGGCTGGAGGTTCATTTACAATATCCAATGGTGGATTTTGTGGAAGCCTTATAAGTACCTCCATCATCAACCCTCCTCGGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

88

Amino Acids

9.58

Weight (kDa)

9.41

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-oxoacid_dh PF00198 28 - 87 9.9e-17 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 233
AciI CCGC 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 163
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 2 cut(s) 22, 171
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Ama87I CYCGRG 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 258
BccI CCATC 1 cut(s) 251
BfaI CTAG 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 258
BmsI GCATC 2 cut(s) 16, 38
BpmI CTGGAG 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 258
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 1 cut(s) 129
BssNI GRCGYC 1 cut(s) 163
BstACI GRCGYC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 141
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 141
CseI GACGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 237
CviAII CATG 1 cut(s) 44
CviJI RGCY 4 cut(s) 7, 61, 185, 228
CviKI_1 RGCY 4 cut(s) 7, 61, 185, 228
CviQI GTAC 1 cut(s) 237
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 31
FaeI CATG 1 cut(s) 47
FaiI YATR 4 cut(s) 45, 65, 182, 233
FaqI GGGAC 1 cut(s) 174
FatI CATG 1 cut(s) 43
FokI GGATG 1 cut(s) 38
FspBI CTAG 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 207
HgaI GACGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 1 cut(s) 72
HphI GGTGA 1 cut(s) 125
Hpy188III TCNNGA 1 cut(s) 69
HpyAV CCTTC 2 cut(s) 118, 142
HpyCH4V TGCA 2 cut(s) 29, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 1 cut(s) 171
LweI GCATC 2 cut(s) 16, 38
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MfeI CAATTG 1 cut(s) 171
MluCI AATT 3 cut(s) 106, 133, 171
MnlI CCTC 5 cut(s) 151, 182, 250, 264, 267
Mph1103I ATGCAT 1 cut(s) 31
MunI CAATTG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 1 cut(s) 129
NlaIII CATG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 14
NsiI ATGCAT 1 cut(s) 31
PfeI GAWTC 1 cut(s) 72
PsiI TTATAA 1 cut(s) 233
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 129
SetI ASST 3 cut(s) 9, 193, 242
SfaNI GCATC 2 cut(s) 16, 38
SgeI CNNG 8 cut(s) 34, 56, 64, 81, 91, 108, 152, 198
Sse9I AATT 3 cut(s) 106, 133, 171
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 96
TaqI TCGA 1 cut(s) 68
TasI AATT 3 cut(s) 106, 133, 171
TfiI GAWTC 1 cut(s) 72
TseFI GTSAC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 4 cut(s) 17, 64, 119, 183
XspI CTAG 1 cut(s) 96
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.