Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000387

Physical Location & Seq

Genomic Coordinates Reverse (-)

8223827 .. 8228423

Gene Structure 4597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1110700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGATTTGGGGGACTATTCGCCGTAAAGTAGCTTCGTCTCAGGTGCTGGGACAAGCGTGGAAGGTTAGGCATGGAGTGTCCGCCCCAAGCTGTTACCGAGCTGTACCAAAAGAGGCTTTGTTAATTGGGAAAGGATATGAGTGCGTTCAGAGTGCAAGCTACCACATTGTTTTAGGCAATTGTGTTCCAGCGCTAAGCAGGGAAGCTACTTCTCTATGTCAAACAGAGTCTTTTATCCGATTGAGCAATAGACCATTTTCCTCAGACAGTGGAGACTTGGTAGAAGCTGTTGTTCCTTTCATGGGTGAATCTATTACTGATGGAACTTTGGCAACATTCCTAAAGAAACCCGGTGACAGAGTCGCAGTTGACGAGCCTATTGCCCAAATTGAAACGGATAAGGTGACAATTGATGTAGTTAGTCCTGAAGCTGGTGTCATTAAAGAGTTTGTGGCTAAGGAAGGCGAGACTGTGGAGCCAGGTGTAAAGATTGCAATCATTTCCAAATCTGGTGAAGGTATAGAACAAGTTGCGCCATCAGAGCAGGCTGATGCTCAGCCAGAACCTACTAAACCGAAGGAAAGTGCAGAAAAGCAAGTCCCCAAAGCGGAACCTGCCCCTGTCAAGGATGCACAACCCAAAACTAAGGCACCTTCTCCACCACCACCACCGCCTAAACACACAGCTTCAGAACTCCGGCTTCCTCCCAAGGATAGGGAAAGACGAGTTCCTATGACAAGACTAAGGAAGCGGGTGGCAATACGCTTGAAAGATTCTCAGAATACATTTGCTCTCTTAACCACATTTAATGAGATTGATATGACTAACTTGATGAAGCTCCGTTCAGACTATAAGGACACCTTTTTGGAAAAGCATGGTGTGAAATTGGGATTTATGTCCGGCTTTGTTAAAGCTGCTGTTAGCGCACTTGAGCAGTTGCCAATTGTCAATGCTGTTATTGATGGTGATGATATCATATACAGAGATTACATTGATATCAGCATAGCTGTTGGGACACCGAAGGGCCTTGTTGTTCCGGTTGTCCGTGATGCTGGTAGTATGAACTTTGCTCAGATAGAGAAGGAAATCAATACCCTGGCTAAGAAAGCAGCTGATGGTTCTATATCAATTGATGAAATGGCTGGAGGCACATTCACAATATCAAACGGAGGTGTATATGGAAGCCTTCTAAGCACACCAATCATCAATCCTCCACAGTCAGCAATTTTGGGTATGCACTCAATAGTGAACCGTCCCATGGTCGTTGGGGGGAACGTTGTACCAAGGCCGATGATGTACATTGCATTGACATACGATCATCGTCTCATTGATGGAAGAGAGGCTGTTTTCTTCTTGCGCCGCATTAAAGATGTCGTGGAAGACCCTCGCAGGCTTCTCCTTGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008270 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl

Protein Analysis

470

Amino Acids

51.0

Weight (kDa)

8.17

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	98 - 167	6e-16	Biotin-requiring enzyme
BSH_CusB	PF25919	114 - 167	7.4e-06	CusB, barrel-sandwich hybrid domain
2-oxoacid_dh	PF00198	239 - 467	3.3e-83	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca	FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica	MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica	Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis	pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis	RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata	RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora	Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa	Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha	Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana	Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	649
AciI	CCGC	5 cut(s)	81, 608, 671, 751, 1360
AclI	AACGTT	1 cut(s)	1275
AcuI	CTGAAG	2 cut(s)	447, 672
AfaI	GTAC	3 cut(s)	105, 1281, 1298
AfeI	AGCGCT	1 cut(s)	192
AfiI	CCNNNNNNNGG	6 cut(s)	302, 431, 607, 625, 714, 1258
AgsI	TTSAA	2 cut(s)	392, 769
AjnI	CCWGG	2 cut(s)	478, 1095
Alw26I	GTCTC	4 cut(s)	42, 267, 461, 1328
AlwNI	CAGNNNCTG	1 cut(s)	46
Aor51HI	AGCGCT	1 cut(s)	192
AoxI	GGCC	2 cut(s)	1024, 1286
ApeKI	GCWGC	2 cut(s)	914, 1109
AspLEI	GCGC	4 cut(s)	193, 535, 926, 1359
AspS9I	GGNCC	1 cut(s)	1024
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	5 cut(s)	317, 365, 415, 524, 977
BanI	GGYRCC	1 cut(s)	649
BarI	GAAGNNNNNNTAC	2 cut(s)	16, 48
BbsI	GAAGAC	1 cut(s)	1386
BbvI	GCAGC	2 cut(s)	901, 1121
BccI	CCATC	5 cut(s)	314, 544, 956, 1109, 1325
BceAI	ACGGC	1 cut(s)	6
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	2 cut(s)	480, 1097
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	4 cut(s)	42, 267, 461, 1328
BfoI	RGCGCY	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	3 cut(s)	915, 1110, 1360
BlpI	GCTNAGC	2 cut(s)	194, 555
BlsI	GCNGC	3 cut(s)	916, 1111, 1361
Bme1390I	CCNGG	3 cut(s)	351, 480, 1097
BmgT120I	GGNCC	1 cut(s)	1024
BmiI	GGNNCC	3 cut(s)	477, 612, 651
BmrFI	CCNGG	3 cut(s)	351, 480, 1097
BmsI	GCATC	3 cut(s)	541, 619, 1039
BpiI	GAAGAC	1 cut(s)	1386
BpmI	CTGGAG	1 cut(s)	1164
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu1102I	GCTNAGC	2 cut(s)	194, 555
BpuEI	CTTGAG	1 cut(s)	950
BpuMI	CCSGG	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	494
BsaJI	CCNNGG	4 cut(s)	708, 1095, 1257, 1283
BsaWI	WCCGGW	1 cut(s)	1036
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	6 cut(s)	302, 431, 607, 625, 714, 1258
Bse3DI	GCAATG	1 cut(s)	1299
Bse8I	GATNNNNATC	1 cut(s)	494
BseBI	CCWGG	2 cut(s)	480, 1097
BseDI	CCNNGG	4 cut(s)	708, 1095, 1257, 1283
BseGI	GGATG	1 cut(s)	634
BseJI	GATNNNNATC	1 cut(s)	494
BseLI	CCNNNNNNNGG	6 cut(s)	302, 431, 607, 625, 714, 1258
BseMI	GCAATG	1 cut(s)	1299
BseMII	CTCAG	5 cut(s)	53, 276, 569, 791, 1085
BseXI	GCAGC	2 cut(s)	901, 1121
BseYI	CCCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	606
BshFI	GGCC	2 cut(s)	1026, 1288
BshNI	GGYRCC	1 cut(s)	649
BsiSI	CCGG	4 cut(s)	351, 697, 900, 1037
BslFI	GGGAC	5 cut(s)	25, 63, 584, 1027, 1239
BslI	CCNNNNNNNGG	6 cut(s)	302, 431, 607, 625, 714, 1258
BsmAI	GTCTC	4 cut(s)	42, 267, 461, 1328
BsmBI	CGTCTC	2 cut(s)	42, 1328
BsmFI	GGGAC	5 cut(s)	25, 63, 584, 1027, 1239
BsnI	GGCC	2 cut(s)	1026, 1288
Bsp1407I	TGTACA	1 cut(s)	1296
Bsp143I	GATC	1 cut(s)	1315
Bsp1720I	GCTNAGC	2 cut(s)	194, 555
Bsp19I	CCATGG	1 cut(s)	1257
BspACI	CCGC	5 cut(s)	81, 608, 671, 751, 1360
BspANI	GGCC	2 cut(s)	1026, 1288
BspCNI	CTCAG	5 cut(s)	52, 275, 568, 790, 1084
BspLI	GGNNCC	3 cut(s)	477, 612, 651
BspMI	ACCTGC	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	1299
BsrGI	TGTACA	1 cut(s)	1296
BssECI	CCNNGG	4 cut(s)	708, 1095, 1257, 1283
BssMI	GATC	1 cut(s)	1315
BssT1I	CCWWGG	3 cut(s)	708, 1257, 1283
Bst2UI	CCWGG	2 cut(s)	480, 1097
Bst4CI	ACNGT	4 cut(s)	269, 472, 1218, 1253
Bst6I	CTCTTC	1 cut(s)	1330
BstAUI	TGTACA	1 cut(s)	1296
BstC8I	GCNNGC	3 cut(s)	157, 546, 1391
BstDSI	CCRYGG	1 cut(s)	1257
BstF5I	GGATG	1 cut(s)	634
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	4 cut(s)	193, 535, 926, 1359
BstKTI	GATC	1 cut(s)	1318
BstMAI	GTCTC	4 cut(s)	42, 267, 461, 1328
BstMBI	GATC	1 cut(s)	1315
BstMWI	GCNNNNNNNGC	5 cut(s)	541, 614, 923, 1106, 1191
BstNI	CCWGG	2 cut(s)	480, 1097
BstSCI	CCNGG	3 cut(s)	349, 478, 1095
BstV1I	GCAGC	2 cut(s)	901, 1121
BstV2I	GAAGAC	1 cut(s)	1386
BsuRI	GGCC	2 cut(s)	1026, 1288
BtgI	CCRYGG	1 cut(s)	1257
BtsCI	GGATG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	3 cut(s)	157, 546, 1391
CaiI	CAGNNNCTG	1 cut(s)	46
CfoI	GCGC	4 cut(s)	193, 535, 926, 1359
Cfr13I	GGNCC	1 cut(s)	1024
Csp6I	GTAC	3 cut(s)	104, 1280, 1297
CviAII	CATG	4 cut(s)	71, 301, 875, 1258
CviQI	GTAC	3 cut(s)	104, 1280, 1297
DpnI	GATC	1 cut(s)	1317
DpnII	GATC	1 cut(s)	1315
Eam1104I	CTCTTC	1 cut(s)	1330
EarI	CTCTTC	1 cut(s)	1330
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	3 cut(s)	708, 1257, 1283
Eco32I	GATATC	2 cut(s)	973, 997
Eco47III	AGCGCT	1 cut(s)	192
Eco57I	CTGAAG	2 cut(s)	447, 672
EcoO109I	RGGNCCY	1 cut(s)	1024
EcoRII	CCWGG	2 cut(s)	478, 1095
EcoRV	GATATC	2 cut(s)	973, 997
EcoT14I	CCWWGG	3 cut(s)	708, 1257, 1283
ErhI	CCWWGG	3 cut(s)	708, 1257, 1283
Esp3I	CGTCTC	2 cut(s)	42, 1328
FaeI	CATG	4 cut(s)	74, 304, 878, 1261
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FaqI	GGGAC	5 cut(s)	25, 63, 584, 1027, 1239
FatI	CATG	4 cut(s)	70, 300, 874, 1257
FauI	CCCGC	1 cut(s)	744
Fnu4HI	GCNGC	3 cut(s)	915, 1110, 1360
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	3 cut(s)	915, 1110, 1360
GlaI	GCGC	4 cut(s)	192, 534, 925, 1358
GluI	GCNGC	3 cut(s)	915, 1110, 1360
GsaI	CCCAGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	1164
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	1026, 1288
HapII	CCGG	4 cut(s)	351, 697, 900, 1037
HhaI	GCGC	4 cut(s)	193, 535, 926, 1359
Hin1II	CATG	4 cut(s)	74, 304, 878, 1261
Hin6I	GCGC	4 cut(s)	191, 533, 924, 1357
HinP1I	GCGC	4 cut(s)	191, 533, 924, 1357
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	4 cut(s)	227, 308, 360, 773
HpaII	CCGG	4 cut(s)	351, 697, 900, 1037
HphI	GGTGA	5 cut(s)	317, 365, 415, 524, 977
Hpy166II	GTNNAC	2 cut(s)	370, 1249
Hpy188I	TCNGA	8 cut(s)	150, 239, 265, 541, 691, 780, 847, 1074
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	2 cut(s)	370, 1249
HpyAV	CCTTC	8 cut(s)	55, 455, 509, 571, 663, 1015, 1075, 1196
HpyCH4III	ACNGT	4 cut(s)	269, 472, 1218, 1253
HpyCH4IV	ACGT	1 cut(s)	1275
HpyCH4V	TGCA	6 cut(s)	155, 494, 587, 632, 1237, 1304
HpyF10VI	GCNNNNNNNGC	5 cut(s)	541, 614, 923, 1106, 1191
HpySE526I	ACGT	1 cut(s)	1275
Hsp92II	CATG	4 cut(s)	74, 304, 878, 1261
HspAI	GCGC	4 cut(s)	191, 533, 924, 1357
Kzo9I	GATC	1 cut(s)	1315
LmnI	GCTCC	2 cut(s)	475, 843
Lsp1109I	GCAGC	2 cut(s)	901, 1121
LweI	GCATC	3 cut(s)	541, 619, 1039
MaeII	ACGT	1 cut(s)	1275
MaeIII	GTNAC	3 cut(s)	92, 353, 403
MalI	GATC	1 cut(s)	1317
MboI	GATC	1 cut(s)	1315
MboII	GAAGA	3 cut(s)	1342, 1347, 1391
MfeI	CAATTG	4 cut(s)	178, 408, 942, 1128
MluCI	AATT	8 cut(s)	123, 178, 387, 408, 884, 942, 1128, 1224
MlyI	GAGTC	2 cut(s)	236, 369
MnlI	CCTC	8 cut(s)	106, 271, 714, 1139, 1163, 1221, 1333, 1395
MseI	TTAA	6 cut(s)	122, 441, 797, 807, 909, 1365
MspA1I	CMGCKG	1 cut(s)	1112
MspI	CCGG	4 cut(s)	351, 697, 900, 1037
MspR9I	CCNGG	3 cut(s)	351, 480, 1097
MunI	CAATTG	4 cut(s)	178, 408, 942, 1128
MvaI	CCWGG	2 cut(s)	480, 1097
MwoI	GCNNNNNNNGC	5 cut(s)	541, 614, 923, 1106, 1191
NciI	CCSGG	1 cut(s)	351
NcoI	CCATGG	1 cut(s)	1257
NdeII	GATC	1 cut(s)	1315
NlaIII	CATG	4 cut(s)	74, 304, 878, 1261
NlaIV	GGNNCC	3 cut(s)	477, 612, 651
NmuCI	GTSAC	2 cut(s)	353, 403
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	308, 773
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	916, 1111, 1361
PleI	GAGTC	2 cut(s)	235, 368
PpsI	GAGTC	2 cut(s)	235, 368
Psp1406I	AACGTT	1 cut(s)	1275
Psp6I	CCWGG	2 cut(s)	478, 1095
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	2 cut(s)	478, 1095
PspN4I	GGNNCC	3 cut(s)	477, 612, 651
PspPI	GGNCC	1 cut(s)	1024
PstNI	CAGNNNCTG	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	1112
RsaI	GTAC	3 cut(s)	105, 1281, 1298
RsaNI	GTAC	3 cut(s)	104, 1280, 1297
SaqAI	TTAA	6 cut(s)	122, 441, 797, 807, 909, 1365
SatI	GCNGC	3 cut(s)	915, 1110, 1360
Sau3AI	GATC	1 cut(s)	1315
Sau96I	GGNCC	1 cut(s)	1024
SchI	GAGTC	2 cut(s)	236, 369
ScrFI	CCNGG	3 cut(s)	351, 480, 1097
SfaNI	GCATC	3 cut(s)	541, 619, 1039
SmlI	CTYRAG	1 cut(s)	929
SmoI	CTYRAG	1 cut(s)	929
Sse9I	AATT	8 cut(s)	123, 178, 387, 408, 884, 942, 1128, 1224
SsiI	CCGC	5 cut(s)	81, 608, 671, 751, 1360
StyD4I	CCNGG	3 cut(s)	349, 478, 1095
StyI	CCWWGG	3 cut(s)	708, 1257, 1283
TaaI	ACNGT	4 cut(s)	269, 472, 1218, 1253
TaiI	ACGT	1 cut(s)	1278
TasI	AATT	8 cut(s)	123, 178, 387, 408, 884, 942, 1128, 1224
TatI	WGTACW	1 cut(s)	1296
TauI	GCSGC	1 cut(s)	1362
TfiI	GAWTC	2 cut(s)	308, 773
Tru1I	TTAA	6 cut(s)	122, 441, 797, 807, 909, 1365
Tru9I	TTAA	6 cut(s)	122, 441, 797, 807, 909, 1365
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	353, 403
TseI	GCWGC	2 cut(s)	914, 1109
Tsp45I	GTSAC	2 cut(s)	353, 403
TspDTI	ATGAA	4 cut(s)	289, 848, 1076, 1149
TspGWI	ACGGA	4 cut(s)	410, 830, 1034, 1182
TspRI	CASTG	1 cut(s)	274
Tth111I	GACNNNGTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.