Rh6BG167900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000387
Physical Location & Seq
Forward (+)
27564059 .. 27565458
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG167900.1

Sequence Viewer

Length: 237 bp
ATGGCTGCGTTCCAATCTAAAACTGCTCTCAACCGACATAAACCTTCCGAATCACAGCTGATATTACAAAAAGTAATTGTAGTAATTACAAAAGAACTACCTTACTTGCAGTTTGGAGACCTTTTAACTACTGGTATACTAACCATTTTATATCTGCACTCATATGGATCAGCACTAACTTATTCTGAAAACACAATTGGAAAGATTGATTTGCTTTACAGGCTGCACATAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.83

Weight (kDa)

9.35

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 136
AclWI GGATC 1 cut(s) 175
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 5, 223
BbvI GCAGC 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 111
BisI GCNGC 2 cut(s) 6, 224
BlsI GCNGC 2 cut(s) 7, 225
BsaI GGTCTC 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 210
BsgI GTGCAG 2 cut(s) 140, 209
BsmAI GTCTC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 167
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 136
BssMI GATC 1 cut(s) 167
BssNAI GTATAC 1 cut(s) 137
Bst1107I GTATAC 1 cut(s) 137
BstKTI GATC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 210
BstZ17I GTATAC 1 cut(s) 137
CviJI RGCY 3 cut(s) 5, 58, 223
CviKI_1 RGCY 3 cut(s) 5, 58, 223
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 111
FaiI YATR 6 cut(s) 39, 137, 151, 163, 165, 230
FauNDI CATATG 1 cut(s) 163
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 6, 224
Fsp4HI GCNGC 2 cut(s) 6, 224
GluI GCNGC 2 cut(s) 6, 224
HinfI GANTC 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 49, 187
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 54
HpyCH4V TGCA 3 cut(s) 109, 157, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
Kzo9I GATC 1 cut(s) 167
LpnPI CCDG 2 cut(s) 117, 205
Lsp1109I GCAGC 1 cut(s) 210
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MfeI CAATTG 1 cut(s) 195
MluCI AATT 3 cut(s) 75, 84, 195
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 58
MunI CAATTG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeI CATATG 1 cut(s) 163
NdeII GATC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 7, 225
PvuII CAGCTG 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 2 cut(s) 6, 224
Sau3AI GATC 1 cut(s) 167
SetI ASST 4 cut(s) 46, 60, 103, 123
SgeI CNNG 3 cut(s) 118, 144, 232
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 3 cut(s) 75, 84, 195
TasI AATT 3 cut(s) 75, 84, 195
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseI GCWGC 2 cut(s) 5, 223
XmiI GTMKAC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.