Rh7AG349300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000387
Physical Location & Seq
Reverse (-)
44360496 .. 44363000
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG349300.1

Sequence Viewer

Length: 201 bp
ATGAAATACTTGGAAACTGAGGATCAGCAAATAGAAACTACTCATGCTGCAGAGCTTCTGTTTGGAGACCTTTTAACTACTGGTATACTAACAATTTTATCTCTGCATTCATATGGATCAGCACTTACTTATTCTGAAAACACAATTGGAAAGATTGATTTGCTTTACAGACTGCTGCACATAAATGACAACCAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.5

Weight (kDa)

4.58

Isoelectric Point (pI)

28.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 85
AclWI GGATC 2 cut(s) 30, 124
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 2 cut(s) 30, 124
ApeKI GCWGC 2 cut(s) 47, 175
BbvI GCAGC 2 cut(s) 34, 162
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 1 cut(s) 199
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 2 cut(s) 48, 176
BlsI GCNGC 2 cut(s) 49, 177
BsaI GGTCTC 1 cut(s) 60
Bse1I ACTGG 2 cut(s) 85, 193
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 2 cut(s) 85, 193
BseXI GCAGC 2 cut(s) 34, 162
BsgI GTGCAG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 106
Bso31I GGTCTC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 22, 116
BspCNI CTCAG 1 cut(s) 10
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 2 cut(s) 30, 124
BspTNI GGTCTC 1 cut(s) 60
BsrI ACTGG 2 cut(s) 85, 193
BssMI GATC 2 cut(s) 22, 116
BssNAI GTATAC 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 2 cut(s) 25, 119
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 2 cut(s) 22, 116
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 34, 162
BstZ17I GTATAC 1 cut(s) 86
CviAII CATG 1 cut(s) 44
CviJI RGCY 1 cut(s) 55
CviKI_1 RGCY 1 cut(s) 55
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 24, 118
DpnII GATC 2 cut(s) 22, 116
Eco31I GGTCTC 1 cut(s) 60
FaeI CATG 1 cut(s) 47
FaiI YATR 5 cut(s) 45, 86, 112, 114, 182
FatI CATG 1 cut(s) 43
FauNDI CATATG 1 cut(s) 112
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 48, 176
Fsp4HI GCNGC 2 cut(s) 48, 176
FspBI CTAG 1 cut(s) 199
FspEI CC 6 cut(s) 5, 48, 66, 83, 99, 132
GluI GCNGC 2 cut(s) 48, 176
Hin1II CATG 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 50, 106, 178
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 2 cut(s) 22, 116
LpnPI CCDG 1 cut(s) 66
Lsp1109I GCAGC 2 cut(s) 34, 162
MaeI CTAG 1 cut(s) 199
MalI GATC 2 cut(s) 24, 118
MboI GATC 2 cut(s) 22, 116
MfeI CAATTG 1 cut(s) 144
MluCI AATT 2 cut(s) 93, 144
MnlI CCTC 1 cut(s) 13
MseI TTAA 1 cut(s) 74
MslI CAYNNNNRTG 2 cut(s) 111, 183
MunI CAATTG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 106
NdeI CATATG 1 cut(s) 112
NdeII GATC 2 cut(s) 22, 116
NlaIII CATG 1 cut(s) 47
PctI GAATGC 1 cut(s) 106
PkrI GCNGC 2 cut(s) 49, 177
PstI CTGCAG 1 cut(s) 52
RseI CAYNNNNRTG 2 cut(s) 111, 183
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 2 cut(s) 48, 176
Sau3AI GATC 2 cut(s) 22, 116
SetI ASST 2 cut(s) 57, 72
SfcI CTRYAG 1 cut(s) 48
SgeI CNNG 3 cut(s) 22, 56, 93
SmiMI CAYNNNNRTG 2 cut(s) 111, 183
Sse9I AATT 2 cut(s) 93, 144
SspMI CTAG 1 cut(s) 199
TasI AATT 2 cut(s) 93, 144
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TseI GCWGC 2 cut(s) 47, 175
TspDTI ATGAA 2 cut(s) 17, 99
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.