Rorug05G0185800

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
17999078 .. 18000040
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0185800.1

Sequence Viewer

Length: 963 bp
ATGTGGAAGCTGCTGAAAGGGGTCTTACCCACAAAGTGTGCGTTGGCAAAGAAGAGGGTTCCTATTGCTGATATGCTTTGCATGTTTTGCATGGGTGACGTTGAAACAGGTACGCATCTATTTAAAAATTGCCCAGCTTTGATTTGTTTTTGGCTATTTGGACCACTTAAGCTGAAAGTTGTGGAGCACCGAGCAACTTGCCTAGAAGGGTGGACGCTGGACATGTTGGATGTATTGACCATTGATCAAAGAGATTTCTTCTTTGTGGGCTTGTGGGCTATATGGGCAGAAAGAAATAGATTGGTTTGGAATAATGGTGCTTTTAAGCCTATGTGTTTAATTGAATGGACAGTCCACTTTCTGGAGGATTATCAGAAATATCACCCTAAGGCAGTGAGAAAGAAGAAGAGGCCATTAACCAAATGGCAATGTCCACCTAGTGGCAGACTGAAAATTAATGTTGATGGGGCTTTTAGACCGGAAAATGGGTGTGGAGGCATTGGGGTAGTGGTTAGAAATGATGCTGGTAAGGGTATTGCTGCTTTAGCTAGACCTTTTCTACATGCTCACTCAGTCCTAAATATGGAAGCTGAGGCGTGTAGAGCTGGTCTTCTCCTTGGTATACATCAAGGGTGGTCTGAAATTGACATTGAAAGCGACTCTGCCATTCTGATTATTGCTCTCAATAGTGTGGAGAAAAATTTCTCGGAGGTGAGTCGGGTTTTGGATGATTGCAAAGATTATTTTAATGCTTTTCAGTCAGTTAGAACTCGACATATTTACCGTGAAGCAAATGGTGCAGCTGATAGGCTAGCGCACCTTGCTAGTTTATTTTCTATTGATGATGTATGGTTAGATGAGACTCCTGCTATTATTCAGGATGTTCTCTACGAGGATTATTGTAATAGTAATTCTGTAGCTCGGGGTTCAGGTTTTATGTCCCCCCCTGATGCAAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

320

Amino Acids

36.11

Weight (kDa)

7.54

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 1 - 51 3.9e-06 zinc-binding in reverse transcriptase
RVT_3 PF13456 153 - 274 4.5e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 361, 440
AccI GTMKAC 1 cut(s) 622
AcsI RAATTY 2 cut(s) 700, 956
AdeI CACNNNGTG 2 cut(s) 36, 440
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 4 cut(s) 361, 440, 485, 583
AflII CTTAAG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 3 cut(s) 104, 344, 653
AluBI AGCT 8 cut(s) 10, 137, 172, 548, 590, 605, 803, 920
AluI AGCT 8 cut(s) 10, 137, 172, 548, 590, 605, 803, 920
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 854
Ama87I CYCGRG 1 cut(s) 921
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 3 cut(s) 10, 539, 800
ApoI RAATTY 2 cut(s) 700, 956
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 701
AspLEI GCGC 1 cut(s) 817
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 107, 374, 724
AsuNHI GCTAGC 1 cut(s) 811
AvaI CYCGRG 1 cut(s) 921
AvaII GGWCC 1 cut(s) 161
AxyI CCTNAGG 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 591
BbvI GCAGC 2 cut(s) 526, 812
BccI CCATC 1 cut(s) 458
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 5 cut(s) 203, 438, 549, 812, 825
BfmI CTRYAG 1 cut(s) 915
BfrI CTTAAG 1 cut(s) 167
BisI GCNGC 3 cut(s) 11, 540, 801
BlsI GCNGC 3 cut(s) 12, 541, 802
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 921
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 60
BmsI GCATC 3 cut(s) 124, 511, 940
BmtI GCTAGC 1 cut(s) 815
BpiI GAAGAC 1 cut(s) 602
BpmI CTGGAG 1 cut(s) 383
Bpu10I CCTNAGC 1 cut(s) 591
BsaJI CCNNGG 1 cut(s) 616
BsaWI WCCGGW 1 cut(s) 478
Bsc4I CCNNNNNNNGG 4 cut(s) 361, 440, 485, 583
Bse21I CCTNAGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 434
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 3 cut(s) 235, 733, 886
BseLI CCNNNNNNNGG 4 cut(s) 361, 440, 485, 583
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 2 cut(s) 582, 585
BseXI GCAGC 2 cut(s) 526, 812
BseYI CCCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 819
BshFI GGCC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 921
BsiSI CCGG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 925
BslI CCNNNNNNNGG 4 cut(s) 361, 440, 485, 583
BsmAI GTCTC 1 cut(s) 854
BsmFI GGGAC 1 cut(s) 925
BsnI GGCC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 921
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 244
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 2 cut(s) 583, 584
BspLI GGNNCC 1 cut(s) 60
BspOI GCTAGC 1 cut(s) 815
BspTI CTTAAG 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 434
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 1 cut(s) 244
BssNAI GTATAC 1 cut(s) 623
BssT1I CCWWGG 1 cut(s) 616
Bst1107I GTATAC 1 cut(s) 623
Bst4CI ACNGT 2 cut(s) 352, 785
Bst6I CTCTTC 2 cut(s) 47, 401
BstAFI CTTAAG 1 cut(s) 167
BstAPI GCANNNNNTGC 2 cut(s) 87, 797
BstC8I GCNNGC 1 cut(s) 813
BstDEI CTNAG 3 cut(s) 387, 571, 591
BstF5I GGATG 3 cut(s) 235, 733, 886
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 6 cut(s) 87, 284, 545, 602, 797, 821
BstNSI RCATGY 3 cut(s) 85, 226, 566
BstSFI CTRYAG 1 cut(s) 915
BstV1I GCAGC 2 cut(s) 526, 812
BstV2I GAAGAC 1 cut(s) 602
BstZ17I GTATAC 1 cut(s) 623
Bsu36I CCTNAGG 1 cut(s) 387
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 3 cut(s) 235, 733, 886
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 813
CfoI GCGC 1 cut(s) 817
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 111
CviAII CATG 4 cut(s) 82, 91, 223, 563
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 3 cut(s) 387, 571, 591
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
DraI TTTAAA 1 cut(s) 124
DraIII CACNNNGTG 2 cut(s) 36, 440
Eam1104I CTCTTC 2 cut(s) 47, 401
EarI CTCTTC 2 cut(s) 47, 401
Eco130I CCWWGG 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 921
EcoT14I CCWWGG 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 4 cut(s) 85, 94, 226, 566
FaqI GGGAC 1 cut(s) 925
FatI CATG 4 cut(s) 81, 90, 222, 562
FbaI TGATCA 1 cut(s) 244
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 3 cut(s) 11, 540, 801
FokI GGATG 3 cut(s) 242, 740, 893
Fsp4HI GCNGC 3 cut(s) 11, 540, 801
FspBI CTAG 5 cut(s) 203, 438, 549, 812, 825
GlaI GCGC 1 cut(s) 816
GluI GCNGC 3 cut(s) 11, 540, 801
GsaI CCCAGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 479
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 817
Hin1II CATG 4 cut(s) 85, 94, 226, 566
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HinfI GANTC 3 cut(s) 659, 715, 862
HpaII CCGG 1 cut(s) 479
HphI GGTGA 3 cut(s) 107, 374, 724
Hpy166II GTNNAC 4 cut(s) 213, 355, 434, 623
Hpy188I TCNGA 4 cut(s) 375, 640, 672, 709
Hpy188III TCNNGA 2 cut(s) 362, 878
Hpy8I GTNNAC 4 cut(s) 213, 355, 434, 623
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 352, 785
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 5 cut(s) 81, 90, 735, 800, 953
HpyF10VI GCNNNNNNNGC 6 cut(s) 87, 284, 545, 602, 797, 821
HpyF3I CTNAG 3 cut(s) 387, 571, 591
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 4 cut(s) 85, 94, 226, 566
HspAI GCGC 1 cut(s) 815
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 2 cut(s) 526, 812
LweI GCATC 3 cut(s) 124, 511, 940
MaeI CTAG 5 cut(s) 203, 438, 549, 812, 825
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 5 cut(s) 64, 250, 415, 418, 602
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 7 cut(s) 127, 339, 453, 642, 700, 910, 956
MlyI GAGTC 3 cut(s) 653, 724, 856
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 7 cut(s) 48, 358, 402, 488, 586, 703, 886
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 8 cut(s) 123, 168, 324, 338, 416, 456, 747, 961
MspA1I CMGCKG 1 cut(s) 803
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 1 cut(s) 479
MwoI GCNNNNNNNGC 6 cut(s) 87, 284, 545, 602, 797, 821
NdeII GATC 1 cut(s) 244
NheI GCTAGC 1 cut(s) 811
NlaIII CATG 4 cut(s) 85, 94, 226, 566
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 3 cut(s) 85, 226, 566
PciI ACATGT 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 701
PflMI CCANNNNNTGG 2 cut(s) 361, 440
PkrI GCNGC 3 cut(s) 12, 541, 802
PleI GAGTC 3 cut(s) 653, 723, 856
PpsI GAGTC 3 cut(s) 653, 723, 856
PscI ACATGT 1 cut(s) 222
PshBI ATTAAT 1 cut(s) 456
PspFI CCCAGC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 8 cut(s) 123, 168, 324, 338, 416, 456, 747, 961
SatI GCNGC 3 cut(s) 11, 540, 801
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 3 cut(s) 653, 724, 856
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 3 cut(s) 124, 511, 940
SfcI CTRYAG 1 cut(s) 915
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 7 cut(s) 127, 339, 453, 642, 700, 910, 956
SspMI CTAG 5 cut(s) 203, 438, 549, 812, 825
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 2 cut(s) 352, 785
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 772
TasI AATT 7 cut(s) 127, 339, 453, 642, 700, 910, 956
Tru1I TTAA 8 cut(s) 123, 168, 324, 338, 416, 456, 747, 961
Tru9I TTAA 8 cut(s) 123, 168, 324, 338, 416, 456, 747, 961
TscAI CASTG 1 cut(s) 399
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 3 cut(s) 10, 539, 800
Tsp45I GTSAC 1 cut(s) 95
TspRI CASTG 1 cut(s) 399
Van91I CCANNNNNTGG 2 cut(s) 361, 440
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 161
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 2 cut(s) 700, 956
XceI RCATGY 3 cut(s) 85, 226, 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 622
XmnI GAANNNNTTC 1 cut(s) 701
XspI CTAG 5 cut(s) 203, 438, 549, 812, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.