Rroxscaffold_7G00209200

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000387
Physical Location & Seq
Reverse (-)
59489854 .. 59490965
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209200.1

Sequence Viewer

Length: 282 bp
ATGTCTATGACAATGCTTCGGAAATGGATTGCTAAAAGATTGAAAGATTCACAAAATACTTATGCAATGCTTACAACATTCAATGAAGTTGATATGACAAATTTGATGAAACTGCGTTGTGACTTTAAGGATGCATCTGTTGAGAAGCGTGGGGTCAAGTTGGGGCTTATGTCGAGATTCATCAAGGCTGCTGTTAGTGGGCTCCAAAATCAGCCTACTATTAATGAAGTCATTGATGGGGATGATATCATATATAGAATGCATAGATATCAAATTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

93

Amino Acids

10.82

Weight (kDa)

9.61

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-oxoacid_dh PF00198 2 - 92 5.2e-18 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 100
AgsI TTSAA 2 cut(s) 43, 82
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 100
AseI ATTAAT 1 cut(s) 222
BanII GRGCYC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 230
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 203
BmsI GCATC 2 cut(s) 121, 143
Bse3DI GCAATG 1 cut(s) 72
BseGI GGATG 2 cut(s) 136, 247
BseMI GCAATG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 136, 247
BstV1I GCAGC 1 cut(s) 175
BtsCI GGATG 2 cut(s) 136, 247
CviJI RGCY 5 cut(s) 166, 188, 202, 214, 279
CviKI_1 RGCY 5 cut(s) 166, 188, 202, 214, 279
Eco24I GRGCYC 1 cut(s) 204
Eco32I GATATC 2 cut(s) 247, 269
EcoRV GATATC 2 cut(s) 247, 269
EcoT22I ATGCAT 2 cut(s) 136, 264
EcoT38I GRGCYC 1 cut(s) 204
FaiI YATR 8 cut(s) 8, 63, 95, 170, 251, 253, 255, 264
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 2 cut(s) 143, 254
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
HinfI GANTC 2 cut(s) 47, 177
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 174
HpyCH4V TGCA 3 cut(s) 65, 134, 262
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 2 cut(s) 121, 143
MaeIII GTNAC 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 2 cut(s) 100, 273
Mph1103I ATGCAT 2 cut(s) 136, 264
MseI TTAA 2 cut(s) 126, 222
Mva1269I GAATGC 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 2 cut(s) 136, 264
PctI GAATGC 1 cut(s) 264
PfeI GAWTC 2 cut(s) 47, 177
PkrI GCNGC 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 203
SaqAI TTAA 2 cut(s) 126, 222
SatI GCNGC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 204
SetI ASST 1 cut(s) 281
SfaNI GCATC 2 cut(s) 121, 143
SgeI CNNG 4 cut(s) 161, 169, 186, 196
Sse9I AATT 2 cut(s) 100, 273
TaqI TCGA 1 cut(s) 173
TasI AATT 2 cut(s) 100, 273
TfiI GAWTC 2 cut(s) 47, 177
Tru1I TTAA 2 cut(s) 126, 222
Tru9I TTAA 2 cut(s) 126, 222
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 99, 122, 169, 240
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 1 cut(s) 100
Zsp2I ATGCAT 2 cut(s) 136, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.