Rmu_sc0010369.1_g000001

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010369.1
OG0000387
Physical Location & Seq
Reverse (-)
18 .. 1123
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010369.1_g000001.1.cds

Sequence Viewer

Length: 357 bp
atgcttggcgctataaggcgaagactcgtctctggagcctcctctccttcgactttgggccactcattgtcttcaatccgacctattgcaaacaaggagattttacctcaaatcggaggaggattgggtcatgtgcgcaattattctcacctcattttagctggttcatcgcattgtatcagaactccgagggatgttggaagctctattcagccagagcctatcaggcaaatgtggagcaggcccttttcttcagagactggggatttggttgacgccgttgtgccttttatgggtgaatctattactgatggaactttggcgacattcttgaagagtatgctagaccaactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

118

Amino Acids

12.65

Weight (kDa)

9.18

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 113, 293
AgsI TTSAA 2 cut(s) 75, 334
AluBI AGCT 2 cut(s) 161, 204
AluI AGCT 2 cut(s) 161, 204
Alw26I GTCTC 2 cut(s) 34, 251
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 2 cut(s) 58, 242
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AspLEI GCGC 2 cut(s) 11, 138
AspS9I GGNCC 2 cut(s) 58, 243
AsuHPI GGTGA 2 cut(s) 140, 308
BbsI GAAGAC 2 cut(s) 28, 63
BccI CCATC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 34, 251
BfaI CTAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 12
BglI GCCNNNNNGGC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 58, 243
BmiI GGNNCC 1 cut(s) 37
BmrI ACTGGG 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 2 cut(s) 28, 63
BpmI CTGGAG 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 293
Bse1I ACTGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 113, 293
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 2 cut(s) 31, 132
BshFI GGCC 2 cut(s) 60, 244
BslI CCNNNNNNNGG 2 cut(s) 113, 293
BsmAI GTCTC 2 cut(s) 34, 251
BsmBI CGTCTC 1 cut(s) 34
BsnI GGCC 2 cut(s) 60, 244
BspANI GGCC 2 cut(s) 60, 244
BspLI GGNNCC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 188
BssNI GRCGYC 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 242
BstF5I GGATG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 138
BstMAI GTCTC 2 cut(s) 34, 251
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstV2I GAAGAC 2 cut(s) 28, 63
BsuRI GGCC 2 cut(s) 60, 244
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 242
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 2 cut(s) 11, 138
Cfr13I GGNCC 2 cut(s) 58, 243
CseI GACGC 1 cut(s) 284
CviAII CATG 1 cut(s) 131
CviJI RGCY 7 cut(s) 38, 60, 161, 204, 214, 220, 244
CviKI_1 RGCY 7 cut(s) 38, 60, 161, 204, 214, 220, 244
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 1 cut(s) 134
FaiI YATR 4 cut(s) 14, 132, 293, 341
FatI CATG 1 cut(s) 130
FokI GGATG 1 cut(s) 206
FspBI CTAG 1 cut(s) 344
FspI TGCGCA 1 cut(s) 137
GlaI GCGC 2 cut(s) 10, 137
GsuI CTGGAG 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 60, 244
HgaI GACGC 1 cut(s) 284
HhaI GCGC 2 cut(s) 11, 138
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 2 cut(s) 9, 136
HinP1I GCGC 2 cut(s) 9, 136
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 2 cut(s) 24, 299
HphI GGTGA 2 cut(s) 140, 308
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 5 cut(s) 80, 116, 182, 189, 256
Hpy188III TCNNGA 2 cut(s) 33, 331
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 2 cut(s) 9, 136
LmnI GCTCC 2 cut(s) 35, 237
LpnPI CCDG 6 cut(s) 18, 147, 211, 226, 228, 246
MaeI CTAG 1 cut(s) 344
MboII GAAGA 4 cut(s) 33, 63, 243, 346
MluCI AATT 1 cut(s) 139
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 103, 178
MnlI CCTC 7 cut(s) 49, 52, 110, 113, 117, 161, 183
MwoI GCNNNNNNNGC 1 cut(s) 226
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 37
NsbI TGCGCA 1 cut(s) 137
PfeI GAWTC 1 cut(s) 299
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 58, 243
PstNI CAGNNNCTG 1 cut(s) 260
Sau96I GGNCC 2 cut(s) 58, 243
SchI GAGTC 1 cut(s) 18
SetI ASST 5 cut(s) 85, 109, 153, 163, 206
Sse9I AATT 1 cut(s) 139
SspMI CTAG 1 cut(s) 344
TaqI TCGA 1 cut(s) 50
TasI AATT 1 cut(s) 139
TfiI GAWTC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 156
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.