pycom09g03320

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
2464500 .. 2468272
3773 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03320.14

Sequence Viewer

Length: 1398 bp
ATGATTTGGGGGACTATTCGCCGTAAAGTAGCTTCGTCTCAGGTGCTGGGACAAGCGTGGAAGGTTAGGCATGGAGTGTCCGCCCCAAGCTGTTACCGAGCTGTACCAAAAGAGGCTTTGTTAATTGGGAAAGGATATGAGTGCGTTCAGAGTGCAAGCTACCACGTTGTTTTAGGCAATTGTGTTCCAGCGCTAAGCAGGGAAGCTACTTCTCTATGTCAAACAGAGTCTTTGATCCGATTGAGCAATAGATCATTTTCCTCAGATAGTGGAGACTTGGTAGAAGCTGTTGTTCCTTTCATGGGTGAATCTATTACTGATGGAACTTTGGCAACATTCCTAAAGAAACCCGGTGACAGAGTTGCAGTTGACGAGCCTATTGCCCAAATTGAAACGGATAAGGTGACAATTGATGTAGTTAGTCCTGAAGCTGGTGTCATTAAAGAGGAAGGCGAGACTGTGGAGCCAGGTGTAAAGATTGCAATCATTTCCAAATCTGGTGAAGGTATAGAACAAGTTGCGCCATCAGAGCAGGCTGATGCTCAGCCAGCACCTACTAAACTGAAGGAAAGTGCAGAAAAGCAAGTCCCCAAAGCAGAACCTGCCCCTGTCAAGGATGCACAACCCAAAACTAAGGCACCTTCTCCACCACCACCACCGCCTAAACACACAGCTTCAGAACTTCAGCTTCCTCCCAAGGATAGGGAAAGACGAGTTCCTATGACAAGACTAAGGAAGCGGGTGGCAATACGCTTGAAAGATTCTCAGAATACATTTGCTCTCTTAACCACATTTAATGAGATTGATATGACTAACTTGATGAAGCTCCGTTCAGACTATAAGGACACCTTTGTGGAAAAGCATGGTGTGAAATTGGGATTTATGTCCGGCTTTGTTAAAGCTGCTGTTAGCGCACTTGAGCAGTTGCCAATTGTCAATGCTGTCATTGATGGTGATGATATCATATACAGAGATTACATTGATATCAGCATAGCTGTTGGGACACCGAAGGGCCTTGTTGTTCCAGTTGTCCGTGATGCTGGTAGTATGAACTTTGCTCAGATAGAGAAGGAAATCAATACCCTGGCTAAGAAAGCAGCTGATGGTTCTATATCAATTGATGAAATGGCTGGAGGCACATTCACAATATCAAACGGAGGTGTATATGGAAGCCTTCTAAGCACACCAATCATCAATCCTCCACAGTCAGCAATTTTGGGTATGCACTCAATAGTGAACCGTCCCATTGTCGTTGGGGGGAACGTTGTACCAAGGCCGATGATGTACATTGCATTGACATATGATCATCGTCTCATTGATGGAAGAGAGGCTGTTTTCTTCTTGCGCCGCATTAAAGATGTCGTGGAAGACCCTCGCAGGCTTCTCCTTGATGTGTAA

Protein Analysis

466

Amino Acids

50.39

Weight (kDa)

7.64

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 637
AciI CCGC 4 cut(s) 81, 659, 739, 1348
AclI AACGTT 1 cut(s) 1263
AclWI GGATC 1 cut(s) 229
AcuI CTGAAG 4 cut(s) 447, 584, 660, 668
AfaI GTAC 3 cut(s) 105, 1269, 1286
AfeI AGCGCT 1 cut(s) 192
AfiI CCNNNNNNNGG 4 cut(s) 302, 431, 613, 702
AgsI TTSAA 2 cut(s) 392, 757
AjnI CCWGG 2 cut(s) 466, 1083
AleI CACNNNNGTG 1 cut(s) 851
Alw26I GTCTC 4 cut(s) 42, 267, 449, 1316
AlwI GGATC 1 cut(s) 229
AlwNI CAGNNNCTG 2 cut(s) 46, 602
Aor51HI AGCGCT 1 cut(s) 192
AoxI GGCC 2 cut(s) 1012, 1274
ApeKI GCWGC 2 cut(s) 902, 1097
AspLEI GCGC 4 cut(s) 193, 523, 914, 1347
AspS9I GGNCC 1 cut(s) 1012
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 5 cut(s) 317, 365, 415, 512, 965
BanI GGYRCC 1 cut(s) 637
BarI GAAGNNNNNNTAC 2 cut(s) 16, 48
BbsI GAAGAC 1 cut(s) 1374
BbvI GCAGC 2 cut(s) 889, 1109
BccI CCATC 5 cut(s) 314, 532, 944, 1097, 1313
BceAI ACGGC 1 cut(s) 6
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BciT130I CCWGG 2 cut(s) 468, 1085
BclI TGATCA 1 cut(s) 1303
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 4 cut(s) 42, 267, 449, 1316
BfoI RGCGCY 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 3 cut(s) 903, 1098, 1348
BlpI GCTNAGC 2 cut(s) 194, 543
BlsI GCNGC 3 cut(s) 904, 1099, 1349
Bme1390I CCNGG 3 cut(s) 351, 468, 1085
BmgT120I GGNCC 1 cut(s) 1012
BmiI GGNNCC 2 cut(s) 465, 639
BmrFI CCNGG 3 cut(s) 351, 468, 1085
BmsI GCATC 3 cut(s) 529, 607, 1027
BpiI GAAGAC 1 cut(s) 1374
BpmI CTGGAG 1 cut(s) 1152
Bpu1102I GCTNAGC 2 cut(s) 194, 543
BpuEI CTTGAG 1 cut(s) 938
BpuMI CCSGG 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 482
BsaJI CCNNGG 3 cut(s) 696, 1083, 1271
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 431, 613, 702
Bse1I ACTGG 1 cut(s) 1025
Bse3DI GCAATG 1 cut(s) 1287
Bse8I GATNNNNATC 1 cut(s) 482
BseBI CCWGG 2 cut(s) 468, 1085
BseDI CCNNGG 3 cut(s) 696, 1083, 1271
BseGI GGATG 1 cut(s) 622
BseJI GATNNNNATC 1 cut(s) 482
BseLI CCNNNNNNNGG 4 cut(s) 302, 431, 613, 702
BseMI GCAATG 1 cut(s) 1287
BseMII CTCAG 5 cut(s) 53, 276, 557, 779, 1073
BseNI ACTGG 1 cut(s) 1025
BseXI GCAGC 2 cut(s) 889, 1109
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 594
BshFI GGCC 2 cut(s) 1014, 1276
BshNI GGYRCC 1 cut(s) 637
BsiSI CCGG 2 cut(s) 351, 888
BslFI GGGAC 5 cut(s) 25, 63, 572, 1015, 1227
BslI CCNNNNNNNGG 4 cut(s) 302, 431, 613, 702
BsmAI GTCTC 4 cut(s) 42, 267, 449, 1316
BsmBI CGTCTC 2 cut(s) 42, 1316
BsmFI GGGAC 5 cut(s) 25, 63, 572, 1015, 1227
BsnI GGCC 2 cut(s) 1014, 1276
Bsp1407I TGTACA 1 cut(s) 1284
Bsp143I GATC 3 cut(s) 234, 251, 1303
Bsp1720I GCTNAGC 2 cut(s) 194, 543
BspACI CCGC 4 cut(s) 81, 659, 739, 1348
BspANI GGCC 2 cut(s) 1014, 1276
BspCNI CTCAG 5 cut(s) 52, 275, 556, 778, 1072
BspLI GGNNCC 2 cut(s) 465, 639
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 1287
BsrGI TGTACA 1 cut(s) 1284
BsrI ACTGG 1 cut(s) 1025
BssECI CCNNGG 3 cut(s) 696, 1083, 1271
BssMI GATC 3 cut(s) 234, 251, 1303
BssT1I CCWWGG 2 cut(s) 696, 1271
Bst2UI CCWGG 2 cut(s) 468, 1085
Bst4CI ACNGT 3 cut(s) 460, 1206, 1241
Bst6I CTCTTC 1 cut(s) 1318
BstAPI GCANNNNNTGC 1 cut(s) 602
BstAUI TGTACA 1 cut(s) 1284
BstC8I GCNNGC 4 cut(s) 157, 534, 549, 1379
BstF5I GGATG 1 cut(s) 622
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 4 cut(s) 193, 523, 914, 1347
BstKTI GATC 3 cut(s) 237, 254, 1306
BstMAI GTCTC 4 cut(s) 42, 267, 449, 1316
BstMBI GATC 3 cut(s) 234, 251, 1303
BstMWI GCNNNNNNNGC 6 cut(s) 529, 548, 602, 911, 1094, 1179
BstNI CCWGG 2 cut(s) 468, 1085
BstSCI CCNGG 3 cut(s) 349, 466, 1083
BstV1I GCAGC 2 cut(s) 889, 1109
BstV2I GAAGAC 1 cut(s) 1374
BsuRI GGCC 2 cut(s) 1014, 1276
BtsCI GGATG 1 cut(s) 622
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 4 cut(s) 157, 534, 549, 1379
CaiI CAGNNNCTG 2 cut(s) 46, 602
CfoI GCGC 4 cut(s) 193, 523, 914, 1347
Cfr13I GGNCC 1 cut(s) 1012
Csp6I GTAC 3 cut(s) 104, 1268, 1285
CviAII CATG 3 cut(s) 71, 301, 863
CviQI GTAC 3 cut(s) 104, 1268, 1285
DpnI GATC 3 cut(s) 236, 253, 1305
DpnII GATC 3 cut(s) 234, 251, 1303
Eam1104I CTCTTC 1 cut(s) 1318
EarI CTCTTC 1 cut(s) 1318
EciI GGCGGA 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 696, 1271
Eco32I GATATC 2 cut(s) 961, 985
Eco47III AGCGCT 1 cut(s) 192
Eco57I CTGAAG 4 cut(s) 447, 584, 660, 668
EcoO109I RGGNCCY 1 cut(s) 1012
EcoRII CCWGG 2 cut(s) 466, 1083
EcoRV GATATC 2 cut(s) 961, 985
EcoT14I CCWWGG 2 cut(s) 696, 1271
ErhI CCWWGG 2 cut(s) 696, 1271
Esp3I CGTCTC 2 cut(s) 42, 1316
FaeI CATG 3 cut(s) 74, 304, 866
FalI AAGNNNNNCTT 2 cut(s) 833, 865
FaqI GGGAC 5 cut(s) 25, 63, 572, 1015, 1227
FatI CATG 3 cut(s) 70, 300, 862
FauI CCCGC 1 cut(s) 732
FauNDI CATATG 1 cut(s) 1300
FbaI TGATCA 1 cut(s) 1303
Fnu4HI GCNGC 3 cut(s) 903, 1098, 1348
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 3 cut(s) 903, 1098, 1348
GlaI GCGC 4 cut(s) 192, 522, 913, 1346
GluI GCNGC 3 cut(s) 903, 1098, 1348
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 1152
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 2 cut(s) 1014, 1276
HapII CCGG 2 cut(s) 351, 888
HhaI GCGC 4 cut(s) 193, 523, 914, 1347
Hin1II CATG 3 cut(s) 74, 304, 866
Hin6I GCGC 4 cut(s) 191, 521, 912, 1345
HinP1I GCGC 4 cut(s) 191, 521, 912, 1345
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 3 cut(s) 227, 308, 761
HpaII CCGG 2 cut(s) 351, 888
HphI GGTGA 5 cut(s) 317, 365, 415, 512, 965
Hpy166II GTNNAC 2 cut(s) 370, 1237
Hpy188I TCNGA 8 cut(s) 150, 239, 265, 529, 679, 768, 835, 1062
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 2 cut(s) 370, 1237
HpyAV CCTTC 8 cut(s) 55, 443, 497, 559, 651, 1003, 1063, 1184
HpyCH4III ACNGT 3 cut(s) 460, 1206, 1241
HpyCH4IV ACGT 2 cut(s) 165, 1263
HpyCH4V TGCA 7 cut(s) 155, 365, 482, 575, 620, 1225, 1292
HpyF10VI GCNNNNNNNGC 6 cut(s) 529, 548, 602, 911, 1094, 1179
HpySE526I ACGT 2 cut(s) 165, 1263
Hsp92II CATG 3 cut(s) 74, 304, 866
HspAI GCGC 4 cut(s) 191, 521, 912, 1345
Ksp22I TGATCA 1 cut(s) 1303
Kzo9I GATC 3 cut(s) 234, 251, 1303
LmnI GCTCC 2 cut(s) 463, 831
Lsp1109I GCAGC 2 cut(s) 889, 1109
LweI GCATC 3 cut(s) 529, 607, 1027
MaeII ACGT 2 cut(s) 165, 1263
MaeIII GTNAC 3 cut(s) 92, 353, 403
MalI GATC 3 cut(s) 236, 253, 1305
MboI GATC 3 cut(s) 234, 251, 1303
MboII GAAGA 3 cut(s) 1330, 1335, 1379
MfeI CAATTG 4 cut(s) 178, 408, 930, 1116
MluCI AATT 8 cut(s) 123, 178, 387, 408, 872, 930, 1116, 1212
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 9 cut(s) 106, 271, 439, 702, 1127, 1151, 1209, 1321, 1383
MseI TTAA 6 cut(s) 122, 441, 785, 795, 897, 1353
MslI CAYNNNNRTG 1 cut(s) 851
MspA1I CMGCKG 1 cut(s) 1100
MspI CCGG 2 cut(s) 351, 888
MspR9I CCNGG 3 cut(s) 351, 468, 1085
MunI CAATTG 4 cut(s) 178, 408, 930, 1116
MvaI CCWGG 2 cut(s) 468, 1085
MwoI GCNNNNNNNGC 6 cut(s) 529, 548, 602, 911, 1094, 1179
NciI CCSGG 1 cut(s) 351
NdeI CATATG 1 cut(s) 1300
NdeII GATC 3 cut(s) 234, 251, 1303
NlaIII CATG 3 cut(s) 74, 304, 866
NlaIV GGNNCC 2 cut(s) 465, 639
NmuCI GTSAC 2 cut(s) 353, 403
OliI CACNNNNGTG 1 cut(s) 851
PfeI GAWTC 2 cut(s) 308, 761
PkrI GCNGC 3 cut(s) 904, 1099, 1349
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp1406I AACGTT 1 cut(s) 1263
Psp6I CCWGG 2 cut(s) 466, 1083
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 2 cut(s) 466, 1083
PspN4I GGNNCC 2 cut(s) 465, 639
PspPI GGNCC 1 cut(s) 1012
PstNI CAGNNNCTG 2 cut(s) 46, 602
PvuII CAGCTG 1 cut(s) 1100
RsaI GTAC 3 cut(s) 105, 1269, 1286
RsaNI GTAC 3 cut(s) 104, 1268, 1285
RseI CAYNNNNRTG 1 cut(s) 851
SaqAI TTAA 6 cut(s) 122, 441, 785, 795, 897, 1353
SatI GCNGC 3 cut(s) 903, 1098, 1348
Sau3AI GATC 3 cut(s) 234, 251, 1303
Sau96I GGNCC 1 cut(s) 1012
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 3 cut(s) 351, 468, 1085
SfaNI GCATC 3 cut(s) 529, 607, 1027
SmiMI CAYNNNNRTG 1 cut(s) 851
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 8 cut(s) 123, 178, 387, 408, 872, 930, 1116, 1212
SsiI CCGC 4 cut(s) 81, 659, 739, 1348
StyD4I CCNGG 3 cut(s) 349, 466, 1083
StyI CCWWGG 2 cut(s) 696, 1271
TaaI ACNGT 3 cut(s) 460, 1206, 1241
TaiI ACGT 2 cut(s) 168, 1266
TasI AATT 8 cut(s) 123, 178, 387, 408, 872, 930, 1116, 1212
TatI WGTACW 1 cut(s) 1284
TauI GCSGC 1 cut(s) 1350
TfiI GAWTC 2 cut(s) 308, 761
Tru1I TTAA 6 cut(s) 122, 441, 785, 795, 897, 1353
Tru9I TTAA 6 cut(s) 122, 441, 785, 795, 897, 1353
TseFI GTSAC 2 cut(s) 353, 403
TseI GCWGC 2 cut(s) 902, 1097
Tsp45I GTSAC 2 cut(s) 353, 403
TspDTI ATGAA 4 cut(s) 289, 836, 1064, 1137
TspGWI ACGGA 4 cut(s) 410, 818, 1022, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.