Rh7AG349400

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000387
Physical Location & Seq
Reverse (-)
44363049 .. 44369298
6250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG349400.1

Sequence Viewer

Length: 189 bp
ATGGACATCAAGGAATATGTTATCTCAATCATGGATTTTTTTCACGATGATCCCATCAATGACATATATAAGAAGATGACTGATCAAAAACCTCTCAGATTTAGGACTCCAGATGCAGTTGCAGCTCCTTCCGTCTTCATTGCCTGTAGACATGAAAATAAGCCACGTAGTGTGAAAGAGATGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
TFIIB TF_Zn_Ribbon

Protein Analysis

62

Amino Acids

7.3

Weight (kDa)

6.7

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIB PF00382 20 - 62 7.1e-07 Transcription factor TFIIB repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 148
AclWI GGATC 1 cut(s) 44
AdeI CACNNNGTG 1 cut(s) 170
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
AlwI GGATC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 62
BclI TGATCA 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 145
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 49, 82
BspCNI CTCAG 1 cut(s) 108
BspPI GGATC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 138
BssMI GATC 2 cut(s) 49, 82
BstBAI YACGTR 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 95
BstKTI GATC 2 cut(s) 52, 85
BstMBI GATC 2 cut(s) 49, 82
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 127
CviAII CATG 2 cut(s) 31, 152
CviJI RGCY 2 cut(s) 125, 163
CviKI_1 RGCY 2 cut(s) 125, 163
DdeI CTNAG 1 cut(s) 95
DpnI GATC 2 cut(s) 51, 84
DpnII GATC 2 cut(s) 49, 82
DraIII CACNNNGTG 1 cut(s) 170
FaeI CATG 2 cut(s) 34, 155
FaiI YATR 6 cut(s) 18, 32, 65, 67, 69, 153
FatI CATG 2 cut(s) 30, 151
FbaI TGATCA 1 cut(s) 82
FblI GTMKAC 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 93
Hin1II CATG 2 cut(s) 34, 155
HinfI GANTC 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 2 cut(s) 44, 110
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 116, 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 2 cut(s) 34, 155
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 2 cut(s) 49, 82
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 2 cut(s) 123, 157
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 166
MalI GATC 2 cut(s) 51, 84
MboI GATC 2 cut(s) 49, 82
MboII GAAGA 2 cut(s) 85, 127
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 2 cut(s) 49, 82
NlaIII CATG 2 cut(s) 34, 155
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 167
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 49, 82
SchI GAGTC 1 cut(s) 100
SetI ASST 3 cut(s) 94, 127, 169
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 145
SgeI CNNG 7 cut(s) 22, 43, 56, 122, 156, 164, 177
TaiI ACGT 1 cut(s) 169
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 127, 168
TspGWI ACGGA 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.