FvH4_1g25684

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000747
Physical Location & Seq
Reverse (-)
17580302 .. 17580815
514 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25684.t1

Sequence Viewer

Length: 216 bp
ATGTCTGCAGGTGGTGATTGGAAGCTGCGTAGATGTGTATTTTGGCTTAATTGGATCAGCTGTCAAAACAAGCAGGTATGTGACTACCGGAGCAGCCTGGTTCAATGGTGTTTTAGCAAGGTGGCAAAGGCAGGGCAGATTGCAGGTACAAAAACTCGAGAAAAGTTTTATATGGTTGTGTCAAACTTGACTGCAAAGGATCCAATAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

72

Amino Acids

8.09

Weight (kDa)

9.64

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 64, 134
AclWI GGATC 3 cut(s) 62, 194, 207
AfaI GTAC 1 cut(s) 148
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 3 cut(s) 25, 60, 209
AluI AGCT 3 cut(s) 25, 60, 209
AlwI GGATC 3 cut(s) 62, 194, 207
Ama87I CYCGRG 1 cut(s) 156
ApeKI GCWGC 3 cut(s) 25, 93, 209
AsuHPI GGTGA 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 156
BamHI GGATCC 1 cut(s) 199
BbvI GCAGC 3 cut(s) 12, 105, 196
BciT130I CCWGG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 6
BfuAI ACCTGC 2 cut(s) 64, 134
BisI GCNGC 3 cut(s) 26, 94, 210
BlsI GCNGC 3 cut(s) 27, 95, 211
Bme1390I CCNGG 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 87
BseBI CCWGG 1 cut(s) 98
BseXI GCAGC 3 cut(s) 12, 105, 196
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 156
Bsp143I GATC 2 cut(s) 54, 199
BspLI GGNNCC 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 2 cut(s) 64, 134
BspPI GGATC 3 cut(s) 62, 194, 207
BssMI GATC 2 cut(s) 54, 199
Bst2UI CCWGG 1 cut(s) 98
BstKTI GATC 2 cut(s) 57, 202
BstMBI GATC 2 cut(s) 54, 199
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 3 cut(s) 12, 105, 196
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BveI ACCTGC 2 cut(s) 64, 134
Csp6I GTAC 1 cut(s) 147
CviJI RGCY 5 cut(s) 25, 46, 60, 96, 209
CviKI_1 RGCY 5 cut(s) 25, 46, 60, 96, 209
CviQI GTAC 1 cut(s) 147
DpnI GATC 2 cut(s) 56, 201
DpnII GATC 2 cut(s) 54, 199
Eco88I CYCGRG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 96
FaiI YATR 4 cut(s) 79, 171, 173, 214
Fnu4HI GCNGC 3 cut(s) 26, 94, 210
Fsp4HI GCNGC 3 cut(s) 26, 94, 210
GluI GCNGC 3 cut(s) 26, 94, 210
HapII CCGG 1 cut(s) 88
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 158
HpyCH4V TGCA 4 cut(s) 8, 143, 194, 212
Kzo9I GATC 2 cut(s) 54, 199
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 6 cut(s) 59, 83, 101, 110, 117, 129
Lsp1109I GCAGC 3 cut(s) 12, 105, 196
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 56, 201
MboI GATC 2 cut(s) 54, 199
MflI RGATCY 1 cut(s) 199
MluCI AATT 1 cut(s) 49
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
NdeII GATC 2 cut(s) 54, 199
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 156
PkrI GCNGC 3 cut(s) 27, 95, 211
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 201
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 60
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 26, 94, 210
Sau3AI GATC 2 cut(s) 54, 199
ScrFI CCNGG 1 cut(s) 98
SetI ASST 7 cut(s) 13, 27, 62, 78, 123, 148, 211
SfcI CTRYAG 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 156
SlaI CTCGAG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 96
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 49
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 3 cut(s) 25, 93, 209
Tsp45I GTSAC 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.