Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

2453805 .. 2457052

Gene Structure 3248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022514

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATGAGCATCAAGAAAATAGACGAGAACTGTCCAAGTAAAGCAACTATCAGATCTAGCCAGCGAGAGAGAGATTCACGAGTTCTTCTCCTTTTCTGGAGAGATCGAACGCATTCAGATCCAACGGGAGCAACAATGGTTGATCAGATTGTGACTATATCTCCTGTTGAAAATTATGTTCCAATCAATGAGATGCCGGAAGTAAGGTCGGTGGAAAGTGCTGATTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGCTGAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGGCAAGATGCTGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGCAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAGAGAAATTGACAGTAGGCCTTTCAGTGGTTAATGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAGATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAGCTGTCAAAACAAGCAGGTATGTGACTGCGGGAGCAGCTTGGTTCAATGGCGCTTTTAGCAAGGTGGCAAAAGCAGGGCAGGCAGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGGATCCAATAGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

249

Amino Acids

26.85

Weight (kDa)

9.37

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	594, 665
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	4 cut(s)	113, 592, 725, 738
AcuI	CTGAAG	1 cut(s)	506
AfaI	GTAC	1 cut(s)	679
AfiI	CCNNNNNNNGG	2 cut(s)	287, 484
AgsI	TTSAA	2 cut(s)	170, 634
AhdI	GACNNNNNGTC	1 cut(s)	524
AluBI	AGCT	4 cut(s)	311, 590, 626, 740
AluI	AGCT	4 cut(s)	311, 590, 626, 740
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	4 cut(s)	113, 592, 725, 738
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	6 cut(s)	230, 545, 557, 623, 671, 740
Asp700I	GAANNNNTTC	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	641
AsuHPI	GGTGA	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	730
BanII	GRGCYC	2 cut(s)	313, 456
BauI	CACGAG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	313
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	6 cut(s)	217, 557, 569, 635, 683, 727
BccI	CCATC	1 cut(s)	266
BclI	TGATCA	2 cut(s)	142, 511
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	2 cut(s)	57, 327
BfoI	RGCGCY	1 cut(s)	642
BfuAI	ACCTGC	2 cut(s)	594, 665
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	6 cut(s)	231, 546, 558, 624, 672, 741
BlsI	GCNGC	6 cut(s)	232, 547, 559, 625, 673, 742
BmeRI	GACNNNNNGTC	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	732
BmsI	GCATC	5 cut(s)	18, 183, 352, 406, 425
BplI	GAGNNNNNCTC	4 cut(s)	72, 104, 438, 470
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	532
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 484
Bse1I	ACTGG	1 cut(s)	586
Bse8I	GATNNNNATC	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	287, 484
BseMII	CTCAG	3 cut(s)	252, 411, 543
BseNI	ACTGG	1 cut(s)	586
BseXI	GCAGC	6 cut(s)	217, 557, 569, 635, 683, 727
BshFI	GGCC	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	287, 484
BsmAI	GTCTC	1 cut(s)	532
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	477
Bso31I	GGTCTC	1 cut(s)	532
Bsp1286I	GDGCHC	2 cut(s)	313, 456
Bsp143I	GATC	7 cut(s)	53, 103, 118, 142, 511, 584, 730
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	3 cut(s)	253, 412, 542
BspLI	GGNNCC	1 cut(s)	732
BspMI	ACCTGC	2 cut(s)	594, 665
BspPI	GGATC	4 cut(s)	113, 592, 725, 738
BspTNI	GGTCTC	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	586
BssMI	GATC	7 cut(s)	53, 103, 118, 142, 511, 584, 730
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	32, 472
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	62, 669
BstDEI	CTNAG	3 cut(s)	261, 420, 529
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	7 cut(s)	56, 106, 121, 145, 514, 587, 733
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	7 cut(s)	53, 103, 118, 142, 511, 584, 730
BstMWI	GCNNNNNNNGC	6 cut(s)	227, 236, 554, 623, 645, 668
BstV1I	GCAGC	6 cut(s)	217, 557, 569, 635, 683, 727
BstX2I	RGATCY	3 cut(s)	53, 118, 730
BstYI	RGATCY	3 cut(s)	53, 118, 730
BsuRI	GGCC	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	489
BveI	ACCTGC	2 cut(s)	594, 665
Cac8I	GCNNGC	2 cut(s)	62, 669
CfoI	GCGC	1 cut(s)	641
Csp6I	GTAC	1 cut(s)	678
CviQI	GTAC	1 cut(s)	678
DdeI	CTNAG	3 cut(s)	261, 420, 529
DpnI	GATC	7 cut(s)	55, 105, 120, 144, 513, 586, 732
DpnII	GATC	7 cut(s)	53, 103, 118, 142, 511, 584, 730
DriI	GACNNNNNGTC	1 cut(s)	524
Eam1105I	GACNNNNNGTC	1 cut(s)	524
Ecl136II	GAGCTC	1 cut(s)	311
Eco147I	AGGCCT	1 cut(s)	477
Eco24I	GRGCYC	2 cut(s)	313, 456
Eco31I	GGTCTC	1 cut(s)	532
Eco53kI	GAGCTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	311
EcoT38I	GRGCYC	2 cut(s)	313, 456
FaiI	YATR	8 cut(s)	158, 177, 300, 332, 609, 702, 704, 745
FauI	CCCGC	1 cut(s)	610
FauNDI	CATATG	1 cut(s)	702
FbaI	TGATCA	2 cut(s)	142, 511
Fnu4HI	GCNGC	6 cut(s)	231, 546, 558, 624, 672, 741
FriOI	GRGCYC	2 cut(s)	313, 456
Fsp4HI	GCNGC	6 cut(s)	231, 546, 558, 624, 672, 741
FspBI	CTAG	2 cut(s)	57, 327
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	6 cut(s)	231, 546, 558, 624, 672, 741
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	641
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	5 cut(s)	53, 118, 147, 421, 532
Hpy188III	TCNNGA	4 cut(s)	13, 78, 97, 314
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	2 cut(s)	32, 472
HpyCH4V	TGCA	5 cut(s)	338, 416, 557, 725, 743
HpyF10VI	GCNNNNNNNGC	6 cut(s)	227, 236, 554, 623, 645, 668
HpyF3I	CTNAG	3 cut(s)	261, 420, 529
HspAI	GCGC	1 cut(s)	639
Ksp22I	TGATCA	2 cut(s)	142, 511
Kzo9I	GATC	7 cut(s)	53, 103, 118, 142, 511, 584, 730
LmnI	GCTCC	2 cut(s)	128, 620
Lsp1109I	GCAGC	6 cut(s)	217, 557, 569, 635, 683, 727
LweI	GCATC	5 cut(s)	18, 183, 352, 406, 425
MaeI	CTAG	2 cut(s)	57, 327
MaeIII	GTNAC	3 cut(s)	151, 427, 610
MalI	GATC	7 cut(s)	55, 105, 120, 144, 513, 586, 732
MboI	GATC	7 cut(s)	53, 103, 118, 142, 511, 584, 730
MboII	GAAGA	1 cut(s)	77
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	3 cut(s)	53, 118, 730
MhlI	GDGCHC	2 cut(s)	313, 456
MluCI	AATT	4 cut(s)	172, 351, 464, 569
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	112
MseI	TTAA	2 cut(s)	489, 572
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	112
MwoI	GCNNNNNNNGC	6 cut(s)	227, 236, 554, 623, 645, 668
NdeI	CATATG	1 cut(s)	702
NdeII	GATC	7 cut(s)	53, 103, 118, 142, 511, 584, 730
NlaIV	GGNNCC	1 cut(s)	732
NmuCI	GTSAC	2 cut(s)	151, 610
PceI	AGGCCT	1 cut(s)	477
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	6 cut(s)	232, 547, 559, 625, 673, 742
Psp124BI	GAGCTC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	732
PsuI	RGATCY	3 cut(s)	53, 118, 730
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
SacI	GAGCTC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	489, 572
SatI	GCNGC	6 cut(s)	231, 546, 558, 624, 672, 741
Sau3AI	GATC	7 cut(s)	53, 103, 118, 142, 511, 584, 730
SduI	GDGCHC	2 cut(s)	313, 456
SfaNI	GCATC	5 cut(s)	18, 183, 352, 406, 425
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	4 cut(s)	172, 351, 464, 569
SseBI	AGGCCT	1 cut(s)	477
SsiI	CCGC	1 cut(s)	617
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	2 cut(s)	57, 327
SstI	GAGCTC	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	32, 472
TaqI	TCGA	1 cut(s)	106
TasI	AATT	4 cut(s)	172, 351, 464, 569
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	489, 572
Tru9I	TTAA	2 cut(s)	489, 572
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	2 cut(s)	151, 610
TseI	GCWGC	6 cut(s)	230, 545, 557, 623, 671, 740
Tsp45I	GTSAC	2 cut(s)	151, 610
TspDTI	ATGAA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	112
XspI	CTAG	2 cut(s)	57, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.