Rorug02G0268400

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000747
Physical Location & Seq
Forward (+)
28371552 .. 28374035
2484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0268400.1

Sequence Viewer

Length: 2484 bp
ATGGCTTCTTCTTCTGTACTGGTTATATTCTTACTCAGTACTGTTTTGATTATCTCGATCATGCCCAATGTAAAAGCTCAAACAAACCACTCCAAATCCAATTTAATCAGCCCGGGCTTCTCTCGATCCCCCCATGTTAATAACCTCAGTATTTCTTCATGGCTGTCATCTTCTGGCCGTTTCGCCTTCGGTTTCTACCCACAAGGCAACGGCTTTGCTGTTGGTATACGGCTTCTTAATCCACCAAACAACACAGTAGTGTGGACTGCAAATCGAGATGACCCCCCTGTCTCCCCAAACTCTACACTGGAACTAACAAGAGACGGTCTCTTGCTTCGGTCAGAGGGAGGCCAAGGAATACGTATTATTAATGGCTCAAGTTCACTAGAAACTAGTGCGATATCAAATGCATCAACTGCAGCTGCAGCTATGCTTGATTCCGGAAACTTTGTACTGTATGATGAGACTTTTTTTGTTATATGGGAGAGCTTTGATTTCCCAACTGATACAATACTGGGAGGCCAAGATTTGCAGACGTCCATGCGTCTGGTATCTAGTGCATCTGCTAAAGACCACTCCAGGGGGCTATTTTCCCTGGTGATGCAGGCTGATGGAAACCTTGTAGCCTACGACCCAAACGGTCCTTATGGTTATTGGGCTACTATAACCGATACTAGAGGTTACCAACTTAGTCTCAACCTATCAGGCTTTCTCGTTTTGAATAACCAATCCAGTGGTCTGAGGACTCGGGTCTTGGCAAACGGCTCGTACCATCACCCACAAGACAATCAAACCACAATCTACCGAGCAACACTTGATGTCGATGGGAATTTCAGATTGTACTTGCATAACTTTCTGATGTCCGGTAGTTCAGAGGGAGCTGTAAGGCATATTTGGTCAACTTTGCAACATCCATGCGACCTCCATGGCAGTTGTGGCTTCAACAGTCATTGTGAAGAAGTCATGCCTGAAGTTGAGTGCAAATGCTACCCTGGATTTGTTTACAACAACGCCAGTCAGAAGTCTCTGGGGTGCTATCATAATTTCACTGTAGAAGGCTGCACCGGAAATGAAGAGCCACGGCTGCGGTACAAGGTAGAGGCCTTGGACAATACATCGTGGAATAATCATCCTTATTCAGTGACACCTATTCGAAACAAGGAAGATTGCAGTGACTCTTGCCTGGGAGACTGCAATTGTTGGGCTGTGCTATATACAGATGGTAATTGCAGAAAATACAAGCTTCCACTTTTATATGGCAAAAAAAATTCAAGTATATCCTCTAAAGGTTTCATTAAAGTGCTTCTATCGGGAAACACGGACAGTATGCCAAATAATTTTCCCGACCTACGCAAAAGTCCGACGGTAGCTGAAAGCAAGAATAATAGTCTAATTCTAATTCTTGCTATCAGTTTGGGTTCCATTGCATTCTTGTGTTCTGTCTTTGCCATCTCGAGTTTCACCATATACAAGCACCGAGTTCATAGGTACGAGAAGCTCTTGAAACATTCGAGTTTGGCATTAGCTGATCAAGAGTACTTCAGTTTACAATCGTTTTCTTATGCTGAGCTCGAAAGAGCAACAGATGGCTTCAAGGAAGAGATAGGAAGGGGTACTTTCGGAGCTGTTTATAAAGGAACTCTATCCAGGGGCAGCTCTAACAAAACTGTTGCTGTTAAAAGACTGGAGAAAGTGGTTGATGAAGGAGTAAGGGAATTTATAGCTGAAATGACCACCATTGGACGAACTCACCACAGAAACTTAATTCAGTTGCTTGGTTTCTGTATTGAGGGTTCTCGAAAGCTTCTTGTTTATGAATACATGAGCAACGGCTCACTTGCGGATCTTATCTTTAAGGCCAAAACTGTGCACTCGTCTTGGAAACAAAGGGTAAGACTTGTATTCGATGTAGCTAAAGGGGTCCTCTATTTACATGACGAATGCAGTGTCCATATCATTCATTCCAATTTGAAACCCCAAAACGTACTCTTGGATCATACTTGGACGGCTAAGATATCTGATTTCGGTTTGGCCAGGCTGGTGCCAAATGAAACAAAAATCAACTCTACTGGAGGAGGAGAAGGAGGAGCGGGAACAGTCGAACAGGTGAGAAGAGGTTACTTGGCGCCCGAATGGCAGAAGAATGCTTTCATATCTGTAAAAGCTGATATCTACAGTTTTGGTATTGTGCTTTTAGAGATTGTATGTTGTAGAAGAAACATAGAAGTAAATATTTCAACACCAGATGAGATCATTCTTTCGAGTTGGGTCAGTAAATGCTTTGCTGCTGGAGAATTAGATAAGCTTGTGGAGGAAGATGAAAATGTAGATTTGAAGACCCTAGAAAGAATGGTGAAAGTGGGGTTGTGGTGCGTTCAAGATGATCCAGCTTTGCGTCCTTTCATGAAGAATGTAATCTTGATGTTGGAAGGGACAATGGACATACCAGTTCCACCATGTCCAGAGCTTCCCTCTCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

827

Amino Acids

91.47

Weight (kDa)

6.53

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 85 - 182 1.3e-15 D-mannose binding lectin
PK_Tyr_Ser-Thr PF07714 531 - 805 1.6e-43 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 532 - 804 1e-39 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1632
AasI GACNNNNNNGTC 1 cut(s) 287
AatII GACGTC 1 cut(s) 539
AccB1I GGYRCC 2 cut(s) 2041, 2125
AccBSI CCGCTC 1 cut(s) 2090
AccI GTMKAC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 440
AciI CCGC 3 cut(s) 1087, 1841, 2090
AclWI GGATC 4 cut(s) 120, 1851, 2001, 2378
AcoI YGGCCR 2 cut(s) 175, 2031
AcsI RAATTY 3 cut(s) 829, 1267, 1715
AcuI CTGAAG 2 cut(s) 990, 1525
AcyI GRCGYC 2 cut(s) 536, 2126
AfiI CCNNNNNNNGG 1 cut(s) 580
AgsI TTSAA 9 cut(s) 721, 943, 1272, 1504, 1594, 1972, 2238, 2335, 2378
AhlI ACTAGT 1 cut(s) 392
AjnI CCWGG 6 cut(s) 578, 594, 991, 1182, 1646, 2033
AleI CACNNNNGTG 1 cut(s) 257
Alw21I GWGCWC 2 cut(s) 1572, 1872
Alw26I GTCTC 7 cut(s) 295, 315, 332, 458, 698, 1029, 1182
Alw44I GTGCAC 1 cut(s) 1868
AlwI GGATC 4 cut(s) 120, 1851, 2001, 2378
Ama87I CYCGRG 3 cut(s) 112, 747, 1453
Aor13HI TCCGGA 1 cut(s) 440
AoxI GGCC 6 cut(s) 175, 349, 520, 1101, 1857, 2031
ApaLI GTGCAC 1 cut(s) 1868
ApeKI GCWGC 7 cut(s) 419, 422, 425, 1059, 1084, 1653, 2285
ApoI RAATTY 3 cut(s) 829, 1267, 1715
ArsI GACNNNNNNTTYG 2 cut(s) 1932, 1964
AseI ATTAAT 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 2147
AspLEI GCGC 1 cut(s) 2128
AspS9I GGNCC 2 cut(s) 641, 1921
AsuC2I CCSGG 2 cut(s) 113, 114
AsuHPI GGTGA 6 cut(s) 610, 767, 1453, 1742, 2119, 2365
AsuII TTCGAA 1 cut(s) 1153
AvaI CYCGRG 3 cut(s) 112, 747, 1453
AvaII GGWCC 2 cut(s) 641, 1921
BaeGI GKGCMC 1 cut(s) 1872
BalI TGGCCA 1 cut(s) 2033
BanI GGYRCC 2 cut(s) 2041, 2125
BanII GRGCYC 1 cut(s) 1572
BbsI GAAGAC 1 cut(s) 2342
Bbv12I GWGCWC 2 cut(s) 1572, 1872
BbvI GCAGC 7 cut(s) 409, 431, 437, 1046, 1071, 1665, 2272
BccI CCATC 6 cut(s) 605, 780, 818, 1214, 1457, 1580
BceAI ACGGC 7 cut(s) 162, 226, 245, 778, 1097, 1846, 2022
BcgI CGANNNNNNTGC 2 cut(s) 747, 781
BciT130I CCWGG 6 cut(s) 580, 596, 993, 1184, 1648, 2035
BclI TGATCA 1 cut(s) 1528
BcnI CCSGG 2 cut(s) 113, 114
BcoDI GTCTC 7 cut(s) 295, 315, 332, 458, 698, 1029, 1182
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 5 cut(s) 386, 393, 555, 675, 2342
BfmI CTRYAG 4 cut(s) 417, 423, 1050, 2173
BfoI RGCGCY 1 cut(s) 2129
BglI GCCNNNNNGGC 1 cut(s) 2134
BisI GCNGC 7 cut(s) 420, 423, 426, 1060, 1085, 1654, 2286
BlpI GCTNAGC 1 cut(s) 1566
BlsI GCNGC 7 cut(s) 421, 424, 427, 1061, 1086, 1655, 2287
BmcAI AGTACT 2 cut(s) 40, 1538
Bme1390I CCNGG 8 cut(s) 113, 114, 580, 596, 993, 1184, 1648, 2035
Bme18I GGWCC 2 cut(s) 641, 1921
BmeT110I CYCGRG 3 cut(s) 112, 747, 1453
BmgT120I GGNCC 2 cut(s) 641, 1921
BmiI GGNNCC 4 cut(s) 1420, 1922, 2043, 2127
BmrFI CCNGG 8 cut(s) 113, 114, 580, 596, 993, 1184, 1648, 2035
BmrI ACTGGG 1 cut(s) 524
BmsI GCATC 3 cut(s) 419, 569, 591
BmuI ACTGGG 1 cut(s) 524
BoxI GACNNNNGTC 1 cut(s) 749
BpiI GAAGAC 1 cut(s) 2342
BplI GAGNNNNNCTC 3 cut(s) 312, 344, 2456
BpmI CTGGAG 4 cut(s) 562, 1706, 2091, 2310
Bpu1102I GCTNAGC 1 cut(s) 1566
Bpu14I TTCGAA 1 cut(s) 1153
BpuEI CTTGAG 1 cut(s) 361
BpuMI CCSGG 2 cut(s) 113, 114
BsaAI YACGTR 1 cut(s) 362
BsaHI GRCGYC 2 cut(s) 536, 2126
BsaI GGTCTC 1 cut(s) 332
BsaWI WCCGGW 3 cut(s) 440, 863, 1064
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse1I ACTGG 8 cut(s) 24, 312, 519, 732, 1014, 1689, 2074, 2447
Bse3DI GCAATG 1 cut(s) 1422
BseAI TCCGGA 1 cut(s) 440
BseBI CCWGG 6 cut(s) 580, 596, 993, 1184, 1648, 2035
BseGI GGATG 2 cut(s) 910, 1129
BseLI CCNNNNNNNGG 1 cut(s) 580
BseMI GCAATG 1 cut(s) 1422
BseMII CTCAG 4 cut(s) 49, 160, 731, 1557
BseNI ACTGG 8 cut(s) 24, 312, 519, 732, 1014, 1689, 2074, 2447
BseRI GAGGAG 3 cut(s) 2088, 2091, 2100
BseSI GKGCMC 1 cut(s) 1872
BseXI GCAGC 7 cut(s) 409, 431, 437, 1046, 1071, 1665, 2272
BsgI GTGCAG 1 cut(s) 1045
BshFI GGCC 6 cut(s) 177, 351, 522, 1103, 1859, 2033
BshNI GGYRCC 2 cut(s) 2041, 2125
BsiHKAI GWGCWC 2 cut(s) 1572, 1872
BsiHKCI CYCGRG 3 cut(s) 112, 747, 1453
BsiSI CCGG 4 cut(s) 113, 441, 864, 1065
BslFI GGGAC 1 cut(s) 2446
BslI CCNNNNNNNGG 1 cut(s) 580
BsmAI GTCTC 7 cut(s) 295, 315, 332, 458, 698, 1029, 1182
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 2446
BsmI GAATGC 3 cut(s) 1427, 1946, 2149
BsnI GGCC 6 cut(s) 177, 351, 522, 1103, 1859, 2033
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 3 cut(s) 112, 747, 1453
Bsp119I TTCGAA 1 cut(s) 1153
Bsp1286I GDGCHC 2 cut(s) 1572, 1872
Bsp13I TCCGGA 1 cut(s) 440
Bsp143I GATC 7 cut(s) 57, 125, 1528, 1843, 1993, 2250, 2383
Bsp1720I GCTNAGC 1 cut(s) 1566
Bsp19I CCATGG 1 cut(s) 925
BspACI CCGC 3 cut(s) 1087, 1841, 2090
BspANI GGCC 6 cut(s) 177, 351, 522, 1103, 1859, 2033
BspCNI CTCAG 4 cut(s) 48, 159, 732, 1558
BspEI TCCGGA 1 cut(s) 440
BspHI TCATGA 1 cut(s) 2403
BspLI GGNNCC 4 cut(s) 1420, 1922, 2043, 2127
BspMAI CTGCAG 2 cut(s) 421, 427
BspPI GGATC 4 cut(s) 120, 1851, 2001, 2378
BspQI GCTCTTC 1 cut(s) 1068
BspT104I TTCGAA 1 cut(s) 1153
BspT107I GGYRCC 2 cut(s) 2041, 2125
BspTNI GGTCTC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 2090
BsrDI GCAATG 1 cut(s) 1422
BsrI ACTGG 8 cut(s) 24, 312, 519, 732, 1014, 1689, 2074, 2447
BssMI GATC 7 cut(s) 57, 125, 1528, 1843, 1993, 2250, 2383
BssNAI GTATAC 1 cut(s) 227
BssNI GRCGYC 2 cut(s) 536, 2126
BssT1I CCWWGG 3 cut(s) 352, 925, 1104
Bst1107I GTATAC 1 cut(s) 227
Bst2UI CCWGG 6 cut(s) 580, 596, 993, 1184, 1648, 2035
Bst6I CTCTTC 3 cut(s) 1068, 1593, 2107
BstACI GRCGYC 2 cut(s) 536, 2126
BstAPI GCANNNNNTGC 1 cut(s) 416
BstBAI YACGTR 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 1153
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 6 cut(s) 35, 146, 689, 740, 1566, 2010
BstDSI CCRYGG 2 cut(s) 925, 1079
BstEII GGTNACC 1 cut(s) 680
BstF5I GGATG 2 cut(s) 910, 1129
BstH2I RGCGCY 1 cut(s) 2129
BstHHI GCGC 1 cut(s) 2128
BstKTI GATC 7 cut(s) 60, 128, 1531, 1846, 1996, 2253, 2386
BstMAI GTCTC 7 cut(s) 295, 315, 332, 458, 698, 1029, 1182
BstMBI GATC 7 cut(s) 57, 125, 1528, 1843, 1993, 2250, 2383
BstMWI GCNNNNNNNGC 5 cut(s) 416, 425, 936, 1084, 2134
BstNI CCWGG 6 cut(s) 580, 596, 993, 1184, 1648, 2035
BstPAI GACNNNNGTC 1 cut(s) 749
BstPI GGTNACC 1 cut(s) 680
BstSCI CCNGG 8 cut(s) 111, 112, 578, 594, 991, 1182, 1646, 2033
BstSFI CTRYAG 4 cut(s) 417, 423, 1050, 2173
BstSLI GKGCMC 1 cut(s) 1872
BstSNI TACGTA 1 cut(s) 362
BstV1I GCAGC 7 cut(s) 409, 431, 437, 1046, 1071, 1665, 2272
BstV2I GAAGAC 1 cut(s) 2342
BstX2I RGATCY 1 cut(s) 1843
BstXI CCANNNNNNTGG 2 cut(s) 547, 734
BstYI RGATCY 1 cut(s) 1843
BstZ17I GTATAC 1 cut(s) 227
BsuRI GGCC 6 cut(s) 177, 351, 522, 1103, 1859, 2033
BtgI CCRYGG 2 cut(s) 925, 1079
BtsCI GGATG 2 cut(s) 910, 1129
BtsI GCAGTG 2 cut(s) 1177, 1951
BtsIMutI CAGTG 6 cut(s) 305, 739, 1047, 1146, 1177, 1951
Cac8I GCNNGC 1 cut(s) 606
CciI TCATGA 1 cut(s) 2403
CfoI GCGC 1 cut(s) 2128
Cfr13I GGNCC 2 cut(s) 641, 1921
Cfr9I CCCGGG 1 cut(s) 112
CseI GACGC 2 cut(s) 533, 2384
DdeI CTNAG 6 cut(s) 35, 146, 689, 740, 1566, 2010
DinI GGCGCC 1 cut(s) 2127
DpnI GATC 7 cut(s) 59, 127, 1530, 1845, 1995, 2252, 2385
DpnII GATC 7 cut(s) 57, 125, 1528, 1843, 1993, 2250, 2383
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 175, 2031
Eam1104I CTCTTC 3 cut(s) 1068, 1593, 2107
EarI CTCTTC 3 cut(s) 1068, 1593, 2107
Ecl136II GAGCTC 1 cut(s) 1570
Eco105I TACGTA 1 cut(s) 362
Eco130I CCWWGG 3 cut(s) 352, 925, 1104
Eco147I AGGCCT 1 cut(s) 1103
Eco24I GRGCYC 1 cut(s) 1572
Eco31I GGTCTC 1 cut(s) 332
Eco32I GATATC 3 cut(s) 402, 2016, 2170
Eco47I GGWCC 2 cut(s) 641, 1921
Eco53kI GAGCTC 1 cut(s) 1570
Eco57I CTGAAG 2 cut(s) 990, 1525
Eco88I CYCGRG 3 cut(s) 112, 747, 1453
Eco91I GGTNACC 1 cut(s) 680
EcoICRI GAGCTC 1 cut(s) 1570
EcoO109I RGGNCCY 1 cut(s) 1921
EcoO65I GGTNACC 1 cut(s) 680
EcoRII CCWGG 6 cut(s) 578, 594, 991, 1182, 1646, 2033
EcoRV GATATC 3 cut(s) 402, 2016, 2170
EcoT14I CCWWGG 3 cut(s) 352, 925, 1104
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 1572
EgeI GGCGCC 1 cut(s) 2127
EheI GGCGCC 1 cut(s) 2127
ErhI CCWWGG 3 cut(s) 352, 925, 1104
Esp3I CGTCTC 1 cut(s) 315
FalI AAGNNNNNCTT 2 cut(s) 1600, 1632
FaqI GGGAC 1 cut(s) 2446
FauI CCCGC 1 cut(s) 2083
FbaI TGATCA 1 cut(s) 1528
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 7 cut(s) 420, 423, 426, 1060, 1085, 1654, 2286
FokI GGATG 2 cut(s) 897, 1116
FriOI GRGCYC 1 cut(s) 1572
Fsp4HI GCNGC 7 cut(s) 420, 423, 426, 1060, 1085, 1654, 2286
FspBI CTAG 5 cut(s) 386, 393, 555, 675, 2342
GlaI GCGC 1 cut(s) 2127
GluI GCNGC 7 cut(s) 420, 423, 426, 1060, 1085, 1654, 2286
GsuI CTGGAG 4 cut(s) 562, 1706, 2091, 2310
HaeII RGCGCY 1 cut(s) 2129
HaeIII GGCC 6 cut(s) 177, 351, 522, 1103, 1859, 2033
HapII CCGG 4 cut(s) 113, 441, 864, 1065
HgaI GACGC 2 cut(s) 533, 2384
HhaI GCGC 1 cut(s) 2128
Hin1I GRCGYC 2 cut(s) 536, 2126
Hin6I GCGC 1 cut(s) 2126
HinP1I GCGC 1 cut(s) 2126
HincII GTYRAC 1 cut(s) 900
HindII GTYRAC 1 cut(s) 900
HindIII AAGCTT 3 cut(s) 1241, 1802, 2303
HinfI GANTC 3 cut(s) 437, 745, 1175
HpaII CCGG 4 cut(s) 113, 441, 864, 1065
HphI GGTGA 6 cut(s) 610, 767, 1453, 1742, 2119, 2365
Hpy166II GTNNAC 7 cut(s) 227, 264, 383, 900, 1003, 1547, 1870
Hpy188I TCNGA 9 cut(s) 343, 741, 836, 858, 874, 1020, 1362, 1622, 2020
Hpy8I GTNNAC 7 cut(s) 227, 264, 383, 900, 1003, 1547, 1870
Hpy99I CGWCG 1 cut(s) 1366
HpyAV CCTTC 6 cut(s) 196, 1049, 1602, 1697, 2075, 2423
HpyCH4IV ACGT 3 cut(s) 361, 536, 1983
HpyF10VI GCNNNNNNNGC 5 cut(s) 416, 425, 936, 1084, 2134
HpyF3I CTNAG 6 cut(s) 35, 146, 689, 740, 1566, 2010
HpySE526I ACGT 3 cut(s) 361, 536, 1983
Hsp92I GRCGYC 2 cut(s) 536, 2126
HspAI GCGC 1 cut(s) 2126
KasI GGCGCC 1 cut(s) 2125
Kpn2I TCCGGA 1 cut(s) 440
Ksp22I TGATCA 1 cut(s) 1528
Kzo9I GATC 7 cut(s) 57, 125, 1528, 1843, 1993, 2250, 2383
LguI GCTCTTC 1 cut(s) 1068
LmnI GCTCC 3 cut(s) 878, 1622, 2087
Lsp1109I GCAGC 7 cut(s) 409, 431, 437, 1046, 1071, 1665, 2272
LweI GCATC 3 cut(s) 419, 569, 591
MaeI CTAG 5 cut(s) 386, 393, 555, 675, 2342
MaeII ACGT 3 cut(s) 361, 536, 1983
MaeIII GTNAC 4 cut(s) 680, 1141, 1172, 2117
MalI GATC 7 cut(s) 59, 127, 1530, 1845, 1995, 2252, 2385
MbiI CCGCTC 1 cut(s) 2090
MboI GATC 7 cut(s) 57, 125, 1528, 1843, 1993, 2250, 2383
MfeI CAATTG 1 cut(s) 1195
MflI RGATCY 1 cut(s) 1843
MhlI GDGCHC 2 cut(s) 1572, 1872
MlsI TGGCCA 1 cut(s) 2033
MluNI TGGCCA 1 cut(s) 2033
Mly113I GGCGCC 1 cut(s) 2126
MlyI GAGTC 2 cut(s) 739, 1169
MmeI TCCRAC 2 cut(s) 1385, 2406
Mox20I TGGCCA 1 cut(s) 2033
Mph1103I ATGCAT 1 cut(s) 412
MroI TCCGGA 1 cut(s) 440
MroXI GAANNNNTTC 1 cut(s) 2147
MscI TGGCCA 1 cut(s) 2033
MseI TTAA 8 cut(s) 104, 138, 237, 369, 1296, 1677, 1763, 1854
MslI CAYNNNNRTG 3 cut(s) 257, 1298, 1432
Msp20I TGGCCA 1 cut(s) 2033
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 4 cut(s) 113, 441, 864, 1065
MspR9I CCNGG 8 cut(s) 113, 114, 580, 596, 993, 1184, 1648, 2035
MunI CAATTG 1 cut(s) 1195
Mva1269I GAATGC 3 cut(s) 1427, 1946, 2149
MvaI CCWGG 6 cut(s) 580, 596, 993, 1184, 1648, 2035
MwoI GCNNNNNNNGC 5 cut(s) 416, 425, 936, 1084, 2134
NarI GGCGCC 1 cut(s) 2126
NciI CCSGG 2 cut(s) 113, 114
NcoI CCATGG 1 cut(s) 925
NdeII GATC 7 cut(s) 57, 125, 1528, 1843, 1993, 2250, 2383
NlaIV GGNNCC 4 cut(s) 1420, 1922, 2043, 2127
NmuCI GTSAC 2 cut(s) 1141, 1172
NsiI ATGCAT 1 cut(s) 412
NspV TTCGAA 1 cut(s) 1153
OliI CACNNNNGTG 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 1453
PagI TCATGA 1 cut(s) 2403
PceI AGGCCT 1 cut(s) 1103
PciSI GCTCTTC 1 cut(s) 1068
PctI GAATGC 3 cut(s) 1427, 1946, 2149
PdmI GAANNNNTTC 1 cut(s) 2147
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 7 cut(s) 421, 424, 427, 1061, 1086, 1655, 2287
PleI GAGTC 2 cut(s) 739, 1169
PluTI GGCGCC 1 cut(s) 2129
PpsI GAGTC 2 cut(s) 739, 1169
Ppu21I YACGTR 1 cut(s) 362
PpuMI RGGWCCY 1 cut(s) 1921
PshAI GACNNNNGTC 1 cut(s) 749
PshBI ATTAAT 1 cut(s) 369
PsiI TTATAA 1 cut(s) 1632
Psp124BI GAGCTC 1 cut(s) 1572
Psp5II RGGWCCY 1 cut(s) 1921
Psp6I CCWGG 6 cut(s) 578, 594, 991, 1182, 1646, 2033
PspEI GGTNACC 1 cut(s) 680
PspGI CCWGG 6 cut(s) 578, 594, 991, 1182, 1646, 2033
PspN4I GGNNCC 4 cut(s) 1420, 1922, 2043, 2127
PspPI GGNCC 2 cut(s) 641, 1921
PspPPI RGGWCCY 1 cut(s) 1921
PsrI GAACNNNNNNTAC 2 cut(s) 1777, 1809
PstI CTGCAG 2 cut(s) 421, 427
PsuI RGATCY 1 cut(s) 1843
PvuII CAGCTG 1 cut(s) 422
RseI CAYNNNNRTG 3 cut(s) 257, 1298, 1432
SacI GAGCTC 1 cut(s) 1572
SapI GCTCTTC 1 cut(s) 1068
SaqAI TTAA 8 cut(s) 104, 138, 237, 369, 1296, 1677, 1763, 1854
SatI GCNGC 7 cut(s) 420, 423, 426, 1060, 1085, 1654, 2286
Sau3AI GATC 7 cut(s) 57, 125, 1528, 1843, 1993, 2250, 2383
Sau96I GGNCC 2 cut(s) 641, 1921
ScaI AGTACT 2 cut(s) 40, 1538
SchI GAGTC 2 cut(s) 739, 1169
ScrFI CCNGG 8 cut(s) 113, 114, 580, 596, 993, 1184, 1648, 2035
SduI GDGCHC 2 cut(s) 1572, 1872
SfaNI GCATC 3 cut(s) 419, 569, 591
SfcI CTRYAG 4 cut(s) 417, 423, 1050, 2173
SfoI GGCGCC 1 cut(s) 2127
Sfr274I CTCGAG 1 cut(s) 1453
SfuI TTCGAA 1 cut(s) 1153
SinI GGWCC 2 cut(s) 641, 1921
SlaI CTCGAG 1 cut(s) 1453
SmaI CCCGGG 1 cut(s) 114
SmiMI CAYNNNNRTG 3 cut(s) 257, 1298, 1432
SmlI CTYRAG 2 cut(s) 376, 1453
SmoI CTYRAG 2 cut(s) 376, 1453
SnaBI TACGTA 1 cut(s) 362
SpeI ACTAGT 1 cut(s) 392
SrfI GCCCGGGC 1 cut(s) 114
SseBI AGGCCT 1 cut(s) 1103
SsiI CCGC 3 cut(s) 1087, 1841, 2090
SspDI GGCGCC 1 cut(s) 2125
SspI AATATT 1 cut(s) 2233
SspMI CTAG 5 cut(s) 386, 393, 555, 675, 2342
SstI GAGCTC 1 cut(s) 1572
StuI AGGCCT 1 cut(s) 1103
StyD4I CCNGG 8 cut(s) 111, 112, 578, 594, 991, 1182, 1646, 2033
StyI CCWWGG 3 cut(s) 352, 925, 1104
TaiI ACGT 3 cut(s) 364, 539, 1986
TaqII GACCGA 1 cut(s) 327
TatI WGTACW 5 cut(s) 16, 38, 451, 840, 1536
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 8 cut(s) 104, 138, 237, 369, 1296, 1677, 1763, 1854
Tru9I TTAA 8 cut(s) 104, 138, 237, 369, 1296, 1677, 1763, 1854
TscAI CASTG 6 cut(s) 312, 739, 1054, 1146, 1177, 1951
TseFI GTSAC 2 cut(s) 1141, 1172
TseI GCWGC 7 cut(s) 419, 422, 425, 1059, 1084, 1653, 2285
Tsp45I GTSAC 2 cut(s) 1141, 1172
TspGWI ACGGA 1 cut(s) 1334
TspMI CCCGGG 1 cut(s) 112
TspRI CASTG 6 cut(s) 312, 739, 1054, 1146, 1177, 1951
VneI GTGCAC 1 cut(s) 1868
VpaK11BI GGWCC 2 cut(s) 641, 1921
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 3 cut(s) 829, 1267, 1715
XcmI CCANNNNNNNNNTGG 1 cut(s) 932
XhoI CTCGAG 1 cut(s) 1453
XmaI CCCGGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 2147
XspI CTAG 5 cut(s) 386, 393, 555, 675, 2342
ZraI GACGTC 1 cut(s) 537
ZrmI AGTACT 2 cut(s) 40, 1538
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.