Rw7G031070

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000747
Physical Location & Seq
Forward (+)
44224689 .. 44230085
5397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031070.1

Sequence Viewer

Length: 777 bp
ATGCATAAATTTGTACAACAGATTATAGATTACAAGTTGCATTTCTTTTCATTTGTACATGAACTGTGTTCAGGTTTCATGCACTCTGAACCAGGTTATCAATATGATCCTGCGCAATCAAAGATTGCATTTGTTATGTTCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGATTGTGACTATATCTCCTGTTGAAAATTATGTACCAATTAATGAGATGCCGAAATTGGTGGAAAGTGCTGTTTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGTTGAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAATGTCTAGTATGTTTGTAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATTGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAAAGAAATTGATAGTAGGCCTTTCAGTGGTTAACGAGAAAGTGAAGTATGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGGTATGGGACTGTGGTAGCACCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGTTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGCCAAAGGCAGCTGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

258

Amino Acids

28.36

Weight (kDa)

9.31

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 114
Acc36I ACCTGC 3 cut(s) 621, 685, 692
AclWI GGATC 2 cut(s) 101, 619
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 533
AfaI GTAC 4 cut(s) 15, 57, 213, 706
AfiI CCNNNNNNNGG 2 cut(s) 314, 511
AgsI TTSAA 4 cut(s) 142, 161, 203, 661
AhdI GACNNNNNGTC 1 cut(s) 551
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 3 cut(s) 155, 338, 767
AluI AGCT 3 cut(s) 155, 338, 767
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 559
AlwI GGATC 2 cut(s) 101, 619
AoxI GGCC 1 cut(s) 502
ApeKI GCWGC 4 cut(s) 257, 572, 584, 764
ApoI RAATTY 1 cut(s) 8
AseI ATTAAT 1 cut(s) 219
AspLEI GCGC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 270
BanII GRGCYC 2 cut(s) 340, 483
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 3 cut(s) 244, 584, 596
BccI CCATC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 1 cut(s) 93
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 559
BfaI CTAG 1 cut(s) 354
BfuAI ACCTGC 3 cut(s) 621, 685, 692
BisI GCNGC 4 cut(s) 258, 573, 585, 765
BlsI GCNGC 4 cut(s) 259, 574, 586, 766
Bme1390I CCNGG 1 cut(s) 93
BmeRI GACNNNNNGTC 1 cut(s) 551
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 4 cut(s) 136, 216, 379, 452
BplI GAGNNNNNCTC 2 cut(s) 465, 497
BpuEI CTTGAG 1 cut(s) 324
Bsa29I ATCGAT 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 1 cut(s) 653
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 511
Bse1I ACTGG 1 cut(s) 613
BseBI CCWGG 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 653
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 314, 511
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 613
BseXI GCAGC 3 cut(s) 244, 584, 596
BshFI GGCC 1 cut(s) 504
BshVI ATCGAT 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 340
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 2 cut(s) 314, 511
BsmAI GTCTC 1 cut(s) 559
BsmFI GGGAC 1 cut(s) 652
BsnI GGCC 1 cut(s) 504
Bso31I GGTCTC 1 cut(s) 559
Bsp1286I GDGCHC 2 cut(s) 340, 483
Bsp1407I TGTACA 2 cut(s) 13, 55
Bsp143I GATC 3 cut(s) 106, 538, 611
BspANI GGCC 1 cut(s) 504
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 179
BspMI ACCTGC 3 cut(s) 621, 685, 692
BspPI GGATC 2 cut(s) 101, 619
BspTNI GGTCTC 1 cut(s) 559
BsrGI TGTACA 2 cut(s) 13, 55
BsrI ACTGG 1 cut(s) 613
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 3 cut(s) 106, 538, 611
BssT1I CCWWGG 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 66, 619, 643
BstAPI GCANNNNNTGC 1 cut(s) 581
BstAUI TGTACA 2 cut(s) 13, 55
BstDEI CTNAG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 151
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 3 cut(s) 109, 541, 614
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 3 cut(s) 106, 538, 611
BstMWI GCNNNNNNNGC 3 cut(s) 254, 263, 581
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 3 cut(s) 244, 584, 596
Bsu15I ATCGAT 1 cut(s) 179
BsuRI GGCC 1 cut(s) 504
BsuTUI ATCGAT 1 cut(s) 179
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 516
BveI ACCTGC 3 cut(s) 621, 685, 692
CfoI GCGC 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 179
CsiI ACCWGGT 1 cut(s) 91
Csp6I GTAC 4 cut(s) 14, 56, 212, 705
CviAII CATG 2 cut(s) 59, 79
CviJI RGCY 9 cut(s) 155, 303, 338, 404, 481, 504, 734, 757, 767
CviKI_1 RGCY 9 cut(s) 155, 303, 338, 404, 481, 504, 734, 757, 767
CviQI GTAC 4 cut(s) 14, 56, 212, 705
DdeI CTNAG 1 cut(s) 447
DpnI GATC 3 cut(s) 108, 540, 613
DpnII GATC 3 cut(s) 106, 538, 611
DriI GACNNNNNGTC 1 cut(s) 551
Eam1105I GACNNNNNGTC 1 cut(s) 551
Ecl136II GAGCTC 1 cut(s) 338
Eco130I CCWWGG 1 cut(s) 653
Eco147I AGGCCT 1 cut(s) 504
Eco24I GRGCYC 2 cut(s) 340, 483
Eco31I GGTCTC 1 cut(s) 559
Eco53kI GAGCTC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 653
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 340, 483
ErhI CCWWGG 1 cut(s) 653
FaeI CATG 2 cut(s) 62, 82
FaqI GGGAC 1 cut(s) 652
FatI CATG 2 cut(s) 58, 78
FauNDI CATATG 1 cut(s) 729
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 4 cut(s) 258, 573, 585, 765
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 2 cut(s) 340, 483
Fsp4HI GCNGC 4 cut(s) 258, 573, 585, 765
FspBI CTAG 1 cut(s) 354
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 1 cut(s) 114
GluI GCNGC 4 cut(s) 258, 573, 585, 765
HaeIII GGCC 1 cut(s) 504
HhaI GCGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 62, 82
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HpaI GTTAAC 1 cut(s) 517
HphI GGTGA 1 cut(s) 270
Hpy166II GTNNAC 2 cut(s) 397, 517
Hpy188I TCNGA 2 cut(s) 88, 448
Hpy188III TCNNGA 2 cut(s) 158, 341
Hpy8I GTNNAC 2 cut(s) 397, 517
HpyAV CCTTC 2 cut(s) 312, 764
HpyCH4III ACNGT 3 cut(s) 66, 619, 643
HpyCH4V TGCA 8 cut(s) 4, 40, 82, 128, 443, 584, 701, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 263, 581
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 2 cut(s) 62, 82
HspAI GCGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 538
KspAI GTTAAC 1 cut(s) 517
Kzo9I GATC 3 cut(s) 106, 538, 611
Lsp1109I GCAGC 3 cut(s) 244, 584, 596
LweI GCATC 4 cut(s) 136, 216, 379, 452
MabI ACCWGGT 1 cut(s) 91
MaeI CTAG 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 184, 454
MalI GATC 3 cut(s) 108, 540, 613
MboI GATC 3 cut(s) 106, 538, 611
MfeI CAATTG 1 cut(s) 378
MhlI GDGCHC 2 cut(s) 340, 483
MluCI AATT 7 cut(s) 8, 205, 216, 233, 378, 491, 596
MnlI CCTC 1 cut(s) 283
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 219, 516, 599
MspA1I CMGCKG 1 cut(s) 767
MspR9I CCNGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 254, 263, 581
NdeI CATATG 1 cut(s) 729
NdeII GATC 3 cut(s) 106, 538, 611
NlaIII CATG 2 cut(s) 62, 82
NmuCI GTSAC 1 cut(s) 184
NsbI TGCGCA 1 cut(s) 114
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 504
PkrI GCNGC 4 cut(s) 259, 574, 586, 766
PshBI ATTAAT 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 767
RsaI GTAC 4 cut(s) 15, 57, 213, 706
RsaNI GTAC 4 cut(s) 14, 56, 212, 705
SacI GAGCTC 1 cut(s) 340
SaqAI TTAA 3 cut(s) 219, 516, 599
SatI GCNGC 4 cut(s) 258, 573, 585, 765
Sau3AI GATC 3 cut(s) 106, 538, 611
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 2 cut(s) 340, 483
SexAI ACCWGGT 1 cut(s) 91
SfaNI GCATC 4 cut(s) 136, 216, 379, 452
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 7 cut(s) 8, 205, 216, 233, 378, 491, 596
SseBI AGGCCT 1 cut(s) 504
SspI AATATT 1 cut(s) 579
SspMI CTAG 1 cut(s) 354
SstI GAGCTC 1 cut(s) 340
StuI AGGCCT 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 653
TaaI ACNGT 3 cut(s) 66, 619, 643
TaqI TCGA 1 cut(s) 179
TasI AATT 7 cut(s) 8, 205, 216, 233, 378, 491, 596
TatI WGTACW 2 cut(s) 13, 55
Tru1I TTAA 3 cut(s) 219, 516, 599
Tru9I TTAA 3 cut(s) 219, 516, 599
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 4 cut(s) 257, 572, 584, 764
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 4 cut(s) 39, 67, 75, 432
TspRI CASTG 1 cut(s) 516
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 1 cut(s) 8
XspI CTAG 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.