Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005010.1

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Forward (+)

31347 .. 34570

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005010.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgcagcagctccagacgagaactgtccaagtaaagcaactatcagatctagccagcgagagagagattcacgagttcttctccttttctggagagatcgaacgcattcagatccaacgtgatcctgcacaatcaaagactgcatttgttactttcaaggatgccaaagctcttgaaatcgcgctcttgttatcgggagcaacaatggttgatcagattgtgactatatctcctgttgaaaattatgtaccaatcaatgaggtgccggaagtgagattggtggaaagtgctgtttgtgctgcccctgctgaaagtgtttcaccaaatgctgaggataaagatggctctcctaacaatggaagggtgtacgtaaatagagctcaagatgtagtgtctagtatgtttgcaaaaggttcagcaattggacaagatgccgtgaacaaggctaaagcatttgatgaaaagcatcggttgagagcaagtgcatctgagaaagtaacttcctttgacaagagagtggggctcacagagaaattgacagtaggcctttcagtggttaacgagaaagtgaagtctgttgatcaaagacttcaggtctcagataaaacaatggcagcaatatttgcagcagagagaaaattaaatgatactggatcagctgtcaaaacaagcaggtatgtgactgcgggagcagcttggttcaatggtgcttttagcaaggtggcaaaggcagggcaggctgcaggtacgaaaaccagagaaaagttccatatggctgtgtcaaacttgactgcaaaggatccaatagctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

271

Amino Acids

29.29

Weight (kDa)

9.04

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	663, 734
AccB1I	GGYRCC	1 cut(s)	262
AccII	CGCG	1 cut(s)	182
AciI	CCGC	1 cut(s)	686
AclWI	GGATC	5 cut(s)	106, 116, 661, 794, 807
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	3 cut(s)	249, 368, 748
AfiI	CCNNNNNNNGG	2 cut(s)	356, 553
AgsI	TTSAA	4 cut(s)	157, 176, 239, 703
AhdI	GACNNNNNGTC	1 cut(s)	593
AluBI	AGCT	6 cut(s)	10, 170, 380, 659, 695, 809
AluI	AGCT	6 cut(s)	10, 170, 380, 659, 695, 809
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	601
AlwI	GGATC	5 cut(s)	106, 116, 661, 794, 807
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	8 cut(s)	4, 7, 299, 614, 626, 692, 740, 809
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	262
BanII	GRGCYC	2 cut(s)	382, 525
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	382
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	8 cut(s)	16, 19, 286, 626, 638, 704, 727, 796
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	419
BclI	TGATCA	2 cut(s)	211, 580
BcoDI	GTCTC	1 cut(s)	601
BfaI	CTAG	2 cut(s)	50, 396
BfmI	CTRYAG	1 cut(s)	741
BfuAI	ACCTGC	2 cut(s)	663, 734
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	8 cut(s)	5, 8, 300, 615, 627, 693, 741, 810
BlsI	GCNGC	8 cut(s)	6, 9, 301, 616, 628, 694, 742, 811
BmeRI	GACNNNNNGTC	1 cut(s)	593
BmiI	GGNNCC	2 cut(s)	264, 801
BmsI	GCATC	4 cut(s)	151, 421, 475, 494
BplI	GAGNNNNNCTC	4 cut(s)	65, 97, 507, 539
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	601
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 553
Bse1I	ACTGG	1 cut(s)	655
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	356, 553
BseMII	CTCAG	3 cut(s)	321, 480, 612
BseNI	ACTGG	1 cut(s)	655
BseXI	GCAGC	8 cut(s)	16, 19, 286, 626, 638, 704, 727, 796
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	356, 553
BsmAI	GTCTC	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	546
Bso31I	GGTCTC	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	382, 525
Bsp143I	GATC	8 cut(s)	46, 96, 111, 121, 211, 580, 653, 799
BspACI	CCGC	1 cut(s)	686
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	3 cut(s)	322, 481, 611
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	264, 801
BspMAI	CTGCAG	1 cut(s)	745
BspMI	ACCTGC	2 cut(s)	663, 734
BspPI	GGATC	5 cut(s)	106, 116, 661, 794, 807
BspT107I	GGYRCC	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	655
BssMI	GATC	8 cut(s)	46, 96, 111, 121, 211, 580, 653, 799
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	25, 541
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	55, 738
BstDEI	CTNAG	3 cut(s)	330, 489, 598
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	8 cut(s)	49, 99, 114, 124, 214, 583, 656, 802
BstMAI	GTCTC	1 cut(s)	601
BstMBI	GATC	8 cut(s)	46, 96, 111, 121, 211, 580, 653, 799
BstMWI	GCNNNNNNNGC	5 cut(s)	296, 305, 623, 692, 737
BstSFI	CTRYAG	1 cut(s)	741
BstSNI	TACGTA	1 cut(s)	370
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	8 cut(s)	16, 19, 286, 626, 638, 704, 727, 796
BstX2I	RGATCY	3 cut(s)	46, 111, 799
BstYI	RGATCY	3 cut(s)	46, 111, 799
BsuRI	GGCC	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	558
BveI	ACCTGC	2 cut(s)	663, 734
Cac8I	GCNNGC	2 cut(s)	55, 738
CfoI	GCGC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	248, 367, 747
CviQI	GTAC	3 cut(s)	248, 367, 747
DdeI	CTNAG	3 cut(s)	330, 489, 598
DpnI	GATC	8 cut(s)	48, 98, 113, 123, 213, 582, 655, 801
DpnII	GATC	8 cut(s)	46, 96, 111, 121, 211, 580, 653, 799
DriI	GACNNNNNGTC	1 cut(s)	593
Eam1105I	GACNNNNNGTC	1 cut(s)	593
Ecl136II	GAGCTC	1 cut(s)	380
Eco105I	TACGTA	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	546
Eco24I	GRGCYC	2 cut(s)	382, 525
Eco31I	GGTCTC	1 cut(s)	601
Eco53kI	GAGCTC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	575
EcoICRI	GAGCTC	1 cut(s)	380
EcoT38I	GRGCYC	2 cut(s)	382, 525
FaiI	YATR	7 cut(s)	227, 246, 401, 678, 771, 773, 814
FauI	CCCGC	1 cut(s)	679
FauNDI	CATATG	1 cut(s)	771
FbaI	TGATCA	2 cut(s)	211, 580
Fnu4HI	GCNGC	8 cut(s)	5, 8, 300, 615, 627, 693, 741, 810
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	2 cut(s)	382, 525
Fsp4HI	GCNGC	8 cut(s)	5, 8, 300, 615, 627, 693, 741, 810
FspBI	CTAG	2 cut(s)	50, 396
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	8 cut(s)	5, 8, 300, 615, 627, 693, 741, 810
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	1 cut(s)	184
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	1 cut(s)	67
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	3 cut(s)	367, 439, 559
Hpy188I	TCNGA	5 cut(s)	46, 111, 216, 490, 601
Hpy188III	TCNNGA	6 cut(s)	13, 71, 90, 173, 195, 383
Hpy8I	GTNNAC	3 cut(s)	367, 439, 559
HpyAV	CCTTC	1 cut(s)	354
HpyCH4III	ACNGT	2 cut(s)	25, 541
HpyCH4IV	ACGT	2 cut(s)	118, 369
HpyCH4V	TGCA	9 cut(s)	4, 128, 143, 407, 485, 626, 743, 794, 812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	296, 305, 623, 692, 737
HpyF3I	CTNAG	3 cut(s)	330, 489, 598
HpySE526I	ACGT	2 cut(s)	118, 369
HspAI	GCGC	1 cut(s)	182
Ksp22I	TGATCA	2 cut(s)	211, 580
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	8 cut(s)	46, 96, 111, 121, 211, 580, 653, 799
LmnI	GCTCC	3 cut(s)	15, 197, 689
Lsp1109I	GCAGC	8 cut(s)	16, 19, 286, 626, 638, 704, 727, 796
LweI	GCATC	4 cut(s)	151, 421, 475, 494
MaeI	CTAG	2 cut(s)	50, 396
MaeII	ACGT	2 cut(s)	118, 369
MaeIII	GTNAC	4 cut(s)	148, 220, 496, 679
MalI	GATC	8 cut(s)	48, 98, 113, 123, 213, 582, 655, 801
MboI	GATC	8 cut(s)	46, 96, 111, 121, 211, 580, 653, 799
MboII	GAAGA	1 cut(s)	70
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	3 cut(s)	46, 111, 799
MhlI	GDGCHC	2 cut(s)	382, 525
MluCI	AATT	4 cut(s)	241, 420, 533, 638
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	2 cut(s)	253, 325
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	2 cut(s)	558, 641
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	105
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	5 cut(s)	296, 305, 623, 692, 737
NdeI	CATATG	1 cut(s)	771
NdeII	GATC	8 cut(s)	46, 96, 111, 121, 211, 580, 653, 799
NlaIV	GGNNCC	2 cut(s)	264, 801
NmuCI	GTSAC	2 cut(s)	220, 679
PceI	AGGCCT	1 cut(s)	546
PctI	GAATGC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	8 cut(s)	6, 9, 301, 616, 628, 694, 742, 811
Ppu21I	YACGTR	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	264, 801
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	3 cut(s)	46, 111, 799
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	3 cut(s)	249, 368, 748
RsaNI	GTAC	3 cut(s)	248, 367, 747
SacI	GAGCTC	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	558, 641
SatI	GCNGC	8 cut(s)	5, 8, 300, 615, 627, 693, 741, 810
Sau3AI	GATC	8 cut(s)	46, 96, 111, 121, 211, 580, 653, 799
SduI	GDGCHC	2 cut(s)	382, 525
SfaNI	GCATC	4 cut(s)	151, 421, 475, 494
SfcI	CTRYAG	1 cut(s)	741
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SnaBI	TACGTA	1 cut(s)	370
Sse9I	AATT	4 cut(s)	241, 420, 533, 638
SseBI	AGGCCT	1 cut(s)	546
SsiI	CCGC	1 cut(s)	686
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	2 cut(s)	50, 396
SstI	GAGCTC	1 cut(s)	382
StuI	AGGCCT	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	25, 541
TaiI	ACGT	2 cut(s)	121, 372
TaqI	TCGA	1 cut(s)	99
TasI	AATT	4 cut(s)	241, 420, 533, 638
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	558, 641
Tru9I	TTAA	2 cut(s)	558, 641
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	2 cut(s)	220, 679
TseI	GCWGC	8 cut(s)	4, 7, 299, 614, 626, 692, 740, 809
Tsp45I	GTSAC	2 cut(s)	220, 679
TspDTI	ATGAA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	2 cut(s)	50, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.