RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 64 |
| AgsI | TTSAA | 3 cut(s) | 19, 271, 293 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 251, 283 |
| AluBI | AGCT | 1 cut(s) | 11 |
| AluI | AGCT | 1 cut(s) | 11 |
| Alw26I | GTCTC | 1 cut(s) | 225 |
| ApeKI | GCWGC | 2 cut(s) | 8, 231 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 266 |
| BbsI | GAAGAC | 1 cut(s) | 258 |
| BbvI | GCAGC | 2 cut(s) | 20, 218 |
| BcoDI | GTCTC | 1 cut(s) | 225 |
| BfmI | CTRYAG | 1 cut(s) | 57 |
| BisI | GCNGC | 2 cut(s) | 9, 232 |
| BlsI | GCNGC | 2 cut(s) | 10, 233 |
| BpiI | GAAGAC | 1 cut(s) | 258 |
| BpuEI | CTTGAG | 1 cut(s) | 209 |
| BsaI | GGTCTC | 1 cut(s) | 225 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 251, 281 |
| Bse1I | ACTGG | 1 cut(s) | 121 |
| BseNI | ACTGG | 1 cut(s) | 121 |
| BseXI | GCAGC | 2 cut(s) | 20, 218 |
| BsmAI | GTCTC | 1 cut(s) | 225 |
| Bso31I | GGTCTC | 1 cut(s) | 225 |
| BspTNI | GGTCTC | 1 cut(s) | 225 |
| BsrI | ACTGG | 1 cut(s) | 121 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstMAI | GTCTC | 1 cut(s) | 225 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 53 |
| BstSFI | CTRYAG | 1 cut(s) | 57 |
| BstV1I | GCAGC | 2 cut(s) | 20, 218 |
| BstV2I | GAAGAC | 1 cut(s) | 258 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| Csp6I | GTAC | 1 cut(s) | 63 |
| CviAII | CATG | 1 cut(s) | 124 |
| CviJI | RGCY | 5 cut(s) | 11, 56, 92, 120, 231 |
| CviKI_1 | RGCY | 5 cut(s) | 11, 56, 92, 120, 231 |
| CviQI | GTAC | 1 cut(s) | 63 |
| Eco31I | GGTCTC | 1 cut(s) | 225 |
| FaeI | CATG | 1 cut(s) | 127 |
| FaiI | YATR | 5 cut(s) | 59, 87, 89, 95, 125 |
| FatI | CATG | 1 cut(s) | 123 |
| FauNDI | CATATG | 1 cut(s) | 87 |
| Fnu4HI | GCNGC | 2 cut(s) | 9, 232 |
| Fsp4HI | GCNGC | 2 cut(s) | 9, 232 |
| GluI | GCNGC | 2 cut(s) | 9, 232 |
| Hin1II | CATG | 1 cut(s) | 127 |
| HpyAV | CCTTC | 5 cut(s) | 129, 146, 169, 185, 191 |
| HpyCH4V | TGCA | 1 cut(s) | 110 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 53 |
| Hsp92II | CATG | 1 cut(s) | 127 |
| LmnI | GCTCC | 1 cut(s) | 5 |
| LpnPI | CCDG | 4 cut(s) | 33, 38, 85, 102 |
| Lsp1109I | GCAGC | 2 cut(s) | 20, 218 |
| MboII | GAAGA | 5 cut(s) | 139, 154, 172, 179, 263 |
| MnlI | CCTC | 2 cut(s) | 197, 290 |
| MroXI | GAANNNNTTC | 1 cut(s) | 266 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 53 |
| NdeI | CATATG | 1 cut(s) | 87 |
| NlaIII | CATG | 1 cut(s) | 127 |
| PdmI | GAANNNNTTC | 1 cut(s) | 266 |
| PkrI | GCNGC | 2 cut(s) | 10, 233 |
| RsaI | GTAC | 1 cut(s) | 64 |
| RsaNI | GTAC | 1 cut(s) | 63 |
| SatI | GCNGC | 2 cut(s) | 9, 232 |
| SetI | ASST | 4 cut(s) | 13, 39, 64, 208 |
| SfcI | CTRYAG | 1 cut(s) | 57 |
| SmlI | CTYRAG | 1 cut(s) | 224 |
| SmoI | CTYRAG | 1 cut(s) | 224 |
| TaqI | TCGA | 1 cut(s) | 280 |
| TseI | GCWGC | 2 cut(s) | 8, 231 |
| TspDTI | ATGAA | 1 cut(s) | 140 |
| XmnI | GAANNNNTTC | 1 cut(s) | 266 |