Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Forward (+)

45299060 .. 45303199

Gene Structure 4140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG366000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTGTTTTTGTTTACAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTACGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGCAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAGAGAAATTGACAGTAGGCCTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAGATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAGCTGTCAAAACAAGCAGGTATGTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

123

Amino Acids

13.43

Weight (kDa)

9.61

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AclWI	GGATC	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	41, 238
AhdI	GACNNNNNGTC	1 cut(s)	278
AluBI	AGCT	2 cut(s)	65, 344
AluI	AGCT	2 cut(s)	65, 344
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	299, 311
BanII	GRGCYC	2 cut(s)	67, 210
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	311, 323
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	104
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	2 cut(s)	300, 312
BlsI	GCNGC	2 cut(s)	301, 313
BmeRI	GACNNNNNGTC	1 cut(s)	278
BmsI	GCATC	3 cut(s)	106, 160, 179
BplI	GAGNNNNNCTC	2 cut(s)	192, 224
BpuEI	CTTGAG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 238
Bse1I	ACTGG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	41, 238
BseMII	CTCAG	2 cut(s)	165, 297
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	311, 323
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	41, 238
BsmAI	GTCTC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	67, 210
Bsp143I	GATC	2 cut(s)	265, 338
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	166, 296
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	346
BspTNI	GGTCTC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	340
BssMI	GATC	2 cut(s)	265, 338
Bst4CI	ACNGT	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	174, 283
BstKTI	GATC	2 cut(s)	268, 341
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	2 cut(s)	265, 338
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSNI	TACGTA	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	311, 323
BsuRI	GGCC	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	52
CviJI	RGCY	6 cut(s)	30, 65, 131, 208, 231, 344
CviKI_1	RGCY	6 cut(s)	30, 65, 131, 208, 231, 344
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	174, 283
DpnI	GATC	2 cut(s)	267, 340
DpnII	GATC	2 cut(s)	265, 338
DriI	GACNNNNNGTC	1 cut(s)	278
Eam1105I	GACNNNNNGTC	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	65
Eco105I	TACGTA	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	67, 210
Eco31I	GGTCTC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	65
EcoT38I	GRGCYC	2 cut(s)	67, 210
FaiI	YATR	3 cut(s)	86, 363, 370
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	300, 312
FriOI	GRGCYC	2 cut(s)	67, 210
Fsp4HI	GCNGC	2 cut(s)	300, 312
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	2 cut(s)	300, 312
HaeIII	GGCC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HpaI	GTTAAC	1 cut(s)	244
Hpy166II	GTNNAC	4 cut(s)	14, 52, 124, 244
Hpy188I	TCNGA	2 cut(s)	175, 286
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	4 cut(s)	14, 52, 124, 244
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	92, 170, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	174, 283
HpySE526I	ACGT	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	265
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	265, 338
LpnPI	CCDG	4 cut(s)	2, 263, 321, 343
Lsp1109I	GCAGC	2 cut(s)	311, 323
LweI	GCATC	3 cut(s)	106, 160, 179
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	267, 340
MboI	GATC	2 cut(s)	265, 338
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	67, 210
MluCI	AATT	3 cut(s)	105, 218, 323
MseI	TTAA	2 cut(s)	243, 326
MspA1I	CMGCKG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	2 cut(s)	265, 338
PceI	AGGCCT	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	301, 313
Ppu21I	YACGTR	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	243, 326
SatI	GCNGC	2 cut(s)	300, 312
Sau3AI	GATC	2 cut(s)	265, 338
SduI	GDGCHC	2 cut(s)	67, 210
SetI	ASST	6 cut(s)	57, 67, 100, 282, 346, 362
SfaNI	GCATC	3 cut(s)	106, 160, 179
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
SnaBI	TACGTA	1 cut(s)	55
Sse9I	AATT	3 cut(s)	105, 218, 323
SseBI	AGGCCT	1 cut(s)	231
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	81
SstI	GAGCTC	1 cut(s)	67
StuI	AGGCCT	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	57
TasI	AATT	3 cut(s)	105, 218, 323
Tru1I	TTAA	2 cut(s)	243, 326
Tru9I	TTAA	2 cut(s)	243, 326
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	2 cut(s)	299, 311
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	243
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.