RchiOBHm_Chr7g0210931

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000747
Physical Location & Seq
Reverse (-)
28282339 .. 28283482
1144 bp
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UTR
Exon/CDS
Intron
PRQ18874

Sequence Viewer

Length: 417 bp
ATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGTCATGTACTCAAATTGCTTTCCTTTCTCTTGGAATTGAAAGGAGCAACAATGGTCGATAAGATTGTGACTATATCTCCTGTTGAAAATTATGTACTAAACAATGAGATGCCAGAAGTAAGAATGGTGGAAAGTGCTGTTTGTGCTGCCTCTGCTGAAAATGTTTCACCAAATGCTGAGAGAACTTATGACGATATTCCAGGGTCTTTGAGTATGATAAAGATGGATCTCCTAACAATGGAAGGGTGTATATATGTCAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGATTCAGCAATTGGACAAGATGCAGTGAACAAGGCTAAAGCATTTGATGGAAAGCATCAGTTGATAGCAAGTGATCTGAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

138

Amino Acids

15.22

Weight (kDa)

6.28

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 267
AfaI GTAC 2 cut(s) 42, 129
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 3 cut(s) 16, 73, 119
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 10, 299
AluI AGCT 2 cut(s) 10, 299
Alw21I GWGCWC 1 cut(s) 301
AlwI GGATC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 192
BanII GRGCYC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 166
BccI CCATC 2 cut(s) 250, 371
BciT130I CCWGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 3 cut(s) 132, 340, 394
BpuEI CTTGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 201, 398
BseXI GCAGC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 2 cut(s) 259, 403
BspCNI CTCAG 2 cut(s) 202, 399
BspPI GGATC 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 2 cut(s) 259, 403
Bst2UI CCWGG 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 210, 407
BstKTI GATC 2 cut(s) 262, 406
BstMBI GATC 2 cut(s) 259, 403
BstMWI GCNNNNNNNGC 2 cut(s) 176, 185
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
Csp6I GTAC 2 cut(s) 41, 128
CviAII CATG 1 cut(s) 38
CviJI RGCY 3 cut(s) 10, 299, 365
CviKI_1 RGCY 3 cut(s) 10, 299, 365
CviQI GTAC 2 cut(s) 41, 128
DdeI CTNAG 2 cut(s) 210, 407
DpnI GATC 2 cut(s) 261, 405
DpnII GATC 2 cut(s) 259, 403
Ecl136II GAGCTC 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 301
FaeI CATG 1 cut(s) 41
FaiI YATR 9 cut(s) 39, 107, 126, 222, 248, 284, 286, 288, 320
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 180
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 315
GluI GCNGC 1 cut(s) 180
Hin1II CATG 1 cut(s) 41
HinfI GANTC 1 cut(s) 332
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 2 cut(s) 13, 302
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 269
HpyCH4V TGCA 2 cut(s) 326, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 185
HpyF3I CTNAG 2 cut(s) 210, 407
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 2 cut(s) 259, 403
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 4 cut(s) 126, 159, 219, 246
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 3 cut(s) 132, 340, 394
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 261, 405
MboI GATC 2 cut(s) 259, 403
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 4 cut(s) 47, 68, 121, 339
MnlI CCTC 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 176, 185
NdeII GATC 2 cut(s) 259, 403
NlaIII CATG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 2 cut(s) 42, 129
RsaNI GTAC 2 cut(s) 41, 128
SacI GAGCTC 1 cut(s) 301
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 259, 403
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 301
SetI ASST 2 cut(s) 12, 301
SfaNI GCATC 3 cut(s) 132, 340, 394
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 4 cut(s) 47, 68, 121, 339
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 232
TaqI TCGA 1 cut(s) 90
TasI AATT 4 cut(s) 47, 68, 121, 339
TatI WGTACW 2 cut(s) 40, 127
TfiI GAWTC 1 cut(s) 332
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 100
TspRI CASTG 1 cut(s) 360
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.