RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 240, 311 |
| AclWI | GGATC | 1 cut(s) | 238 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 154 |
| AgsI | TTSAA | 1 cut(s) | 280 |
| AluBI | AGCT | 3 cut(s) | 272, 413, 430 |
| AluI | AGCT | 3 cut(s) | 272, 413, 430 |
| AlwI | GGATC | 1 cut(s) | 238 |
| AoxI | GGCC | 1 cut(s) | 145 |
| ApeKI | GCWGC | 3 cut(s) | 203, 269, 410 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| BanII | GRGCYC | 1 cut(s) | 126 |
| BbvI | GCAGC | 3 cut(s) | 215, 281, 422 |
| BccI | CCATC | 1 cut(s) | 400 |
| BceAI | ACGGC | 1 cut(s) | 20 |
| BfuAI | ACCTGC | 2 cut(s) | 240, 311 |
| BisI | GCNGC | 3 cut(s) | 204, 270, 411 |
| BlsI | GCNGC | 3 cut(s) | 205, 271, 412 |
| BmsI | GCATC | 2 cut(s) | 76, 95 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 108, 140 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 154 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 154 |
| BseMII | CTCAG | 2 cut(s) | 81, 428 |
| BseXI | GCAGC | 3 cut(s) | 215, 281, 422 |
| BshFI | GGCC | 1 cut(s) | 147 |
| BslFI | GGGAC | 1 cut(s) | 271 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 154 |
| BsmFI | GGGAC | 1 cut(s) | 271 |
| BsnI | GGCC | 1 cut(s) | 147 |
| Bsp1286I | GDGCHC | 1 cut(s) | 126 |
| Bsp143I | GATC | 2 cut(s) | 230, 420 |
| BspANI | GGCC | 1 cut(s) | 147 |
| BspCNI | CTCAG | 2 cut(s) | 82, 427 |
| BspMI | ACCTGC | 2 cut(s) | 240, 311 |
| BspPI | GGATC | 1 cut(s) | 238 |
| BssMI | GATC | 2 cut(s) | 230, 420 |
| Bst4CI | ACNGT | 3 cut(s) | 238, 262, 355 |
| Bst6I | CTCTTC | 1 cut(s) | 390 |
| BstDEI | CTNAG | 2 cut(s) | 90, 414 |
| BstKTI | GATC | 2 cut(s) | 233, 423 |
| BstMBI | GATC | 2 cut(s) | 230, 420 |
| BstV1I | GCAGC | 3 cut(s) | 215, 281, 422 |
| BsuRI | GGCC | 1 cut(s) | 147 |
| BtsIMutI | CAGTG | 1 cut(s) | 159 |
| BveI | ACCTGC | 2 cut(s) | 240, 311 |
| CviJI | RGCY | 7 cut(s) | 35, 47, 124, 147, 272, 413, 430 |
| CviKI_1 | RGCY | 7 cut(s) | 35, 47, 124, 147, 272, 413, 430 |
| DdeI | CTNAG | 2 cut(s) | 90, 414 |
| DpnI | GATC | 2 cut(s) | 232, 422 |
| DpnII | GATC | 2 cut(s) | 230, 420 |
| Eam1104I | CTCTTC | 1 cut(s) | 390 |
| EarI | CTCTTC | 1 cut(s) | 390 |
| Eco147I | AGGCCT | 1 cut(s) | 147 |
| Eco24I | GRGCYC | 1 cut(s) | 126 |
| EcoT38I | GRGCYC | 1 cut(s) | 126 |
| FaiI | YATR | 8 cut(s) | 255, 326, 348, 350, 384, 404, 433, 435 |
| FaqI | GGGAC | 1 cut(s) | 271 |
| FauNDI | CATATG | 1 cut(s) | 348 |
| Fnu4HI | GCNGC | 3 cut(s) | 204, 270, 411 |
| FriOI | GRGCYC | 1 cut(s) | 126 |
| Fsp4HI | GCNGC | 3 cut(s) | 204, 270, 411 |
| GluI | GCNGC | 3 cut(s) | 204, 270, 411 |
| HaeIII | GGCC | 1 cut(s) | 147 |
| HincII | GTYRAC | 1 cut(s) | 160 |
| HindII | GTYRAC | 1 cut(s) | 160 |
| HpaI | GTTAAC | 1 cut(s) | 160 |
| Hpy166II | GTNNAC | 2 cut(s) | 40, 160 |
| Hpy188I | TCNGA | 3 cut(s) | 91, 178, 417 |
| Hpy8I | GTNNAC | 2 cut(s) | 40, 160 |
| HpyCH4III | ACNGT | 3 cut(s) | 238, 262, 355 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 86, 203, 320, 371 |
| HpyF3I | CTNAG | 2 cut(s) | 90, 414 |
| KspAI | GTTAAC | 1 cut(s) | 160 |
| Kzo9I | GATC | 2 cut(s) | 230, 420 |
| LmnI | GCTCC | 1 cut(s) | 266 |
| LpnPI | CCDG | 4 cut(s) | 235, 294, 306, 346 |
| Lsp1109I | GCAGC | 3 cut(s) | 215, 281, 422 |
| LweI | GCATC | 2 cut(s) | 76, 95 |
| MaeIII | GTNAC | 1 cut(s) | 97 |
| MalI | GATC | 2 cut(s) | 232, 422 |
| MboI | GATC | 2 cut(s) | 230, 420 |
| MboII | GAAGA | 2 cut(s) | 407, 430 |
| MfeI | CAATTG | 1 cut(s) | 21 |
| MhlI | GDGCHC | 1 cut(s) | 126 |
| MluCI | AATT | 3 cut(s) | 21, 134, 215 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MseI | TTAA | 2 cut(s) | 159, 218 |
| MunI | CAATTG | 1 cut(s) | 21 |
| NdeI | CATATG | 1 cut(s) | 348 |
| NdeII | GATC | 2 cut(s) | 230, 420 |
| PceI | AGGCCT | 1 cut(s) | 147 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| PflFI | GACNNNGTC | 1 cut(s) | 355 |
| PkrI | GCNGC | 3 cut(s) | 205, 271, 412 |
| PsyI | GACNNNGTC | 1 cut(s) | 355 |
| SaqAI | TTAA | 2 cut(s) | 159, 218 |
| SatI | GCNGC | 3 cut(s) | 204, 270, 411 |
| Sau3AI | GATC | 2 cut(s) | 230, 420 |
| SduI | GDGCHC | 1 cut(s) | 126 |
| SetI | ASST | 8 cut(s) | 16, 254, 274, 300, 325, 378, 415, 432 |
| SfaNI | GCATC | 2 cut(s) | 76, 95 |
| Sse9I | AATT | 3 cut(s) | 21, 134, 215 |
| SseBI | AGGCCT | 1 cut(s) | 147 |
| SspI | AATATT | 1 cut(s) | 198 |
| StuI | AGGCCT | 1 cut(s) | 147 |
| TaaI | ACNGT | 3 cut(s) | 238, 262, 355 |
| TaqI | TCGA | 1 cut(s) | 426 |
| TasI | AATT | 3 cut(s) | 21, 134, 215 |
| Tru1I | TTAA | 2 cut(s) | 159, 218 |
| Tru9I | TTAA | 2 cut(s) | 159, 218 |
| TscAI | CASTG | 1 cut(s) | 159 |
| TseI | GCWGC | 3 cut(s) | 203, 269, 410 |
| TspDTI | ATGAA | 3 cut(s) | 75, 335, 341 |
| TspRI | CASTG | 1 cut(s) | 159 |
| Tth111I | GACNNNGTC | 1 cut(s) | 355 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |