RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 264, 328, 335 |
| AclWI | GGATC | 1 cut(s) | 262 |
| AcsI | RAATTY | 1 cut(s) | 465 |
| AcuI | CTGAAG | 1 cut(s) | 176 |
| AfaI | GTAC | 1 cut(s) | 349 |
| AgsI | TTSAA | 1 cut(s) | 304 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 194 |
| AluBI | AGCT | 1 cut(s) | 296 |
| AluI | AGCT | 1 cut(s) | 296 |
| Alw26I | GTCTC | 1 cut(s) | 202 |
| AlwI | GGATC | 1 cut(s) | 262 |
| AoxI | GGCC | 1 cut(s) | 145 |
| ApeKI | GCWGC | 3 cut(s) | 215, 227, 293 |
| ApoI | RAATTY | 1 cut(s) | 465 |
| BanII | GRGCYC | 1 cut(s) | 126 |
| BbvI | GCAGC | 3 cut(s) | 227, 239, 305 |
| BceAI | ACGGC | 1 cut(s) | 20 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 202 |
| BfuAI | ACCTGC | 3 cut(s) | 264, 328, 335 |
| BisI | GCNGC | 3 cut(s) | 216, 228, 294 |
| BlsI | GCNGC | 3 cut(s) | 217, 229, 295 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 194 |
| BmsI | GCATC | 2 cut(s) | 22, 76 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 108, 140 |
| BpmI | CTGGAG | 1 cut(s) | 468 |
| BsaI | GGTCTC | 1 cut(s) | 202 |
| Bse1I | ACTGG | 1 cut(s) | 256 |
| BseNI | ACTGG | 1 cut(s) | 256 |
| BseRI | GAGGAG | 1 cut(s) | 443 |
| BseXI | GCAGC | 3 cut(s) | 227, 239, 305 |
| BshFI | GGCC | 1 cut(s) | 147 |
| BsmAI | GTCTC | 1 cut(s) | 202 |
| BsnI | GGCC | 1 cut(s) | 147 |
| Bso31I | GGTCTC | 1 cut(s) | 202 |
| Bsp1286I | GDGCHC | 1 cut(s) | 126 |
| Bsp143I | GATC | 2 cut(s) | 181, 254 |
| BspANI | GGCC | 1 cut(s) | 147 |
| BspMI | ACCTGC | 3 cut(s) | 264, 328, 335 |
| BspPI | GGATC | 1 cut(s) | 262 |
| BspTNI | GGTCTC | 1 cut(s) | 202 |
| BsrI | ACTGG | 1 cut(s) | 256 |
| BssMI | GATC | 2 cut(s) | 181, 254 |
| Bst4CI | ACNGT | 3 cut(s) | 142, 262, 286 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 224 |
| BstKTI | GATC | 2 cut(s) | 184, 257 |
| BstMAI | GTCTC | 1 cut(s) | 202 |
| BstMBI | GATC | 2 cut(s) | 181, 254 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 224 |
| BstV1I | GCAGC | 3 cut(s) | 227, 239, 305 |
| BsuRI | GGCC | 1 cut(s) | 147 |
| BveI | ACCTGC | 3 cut(s) | 264, 328, 335 |
| Csp6I | GTAC | 1 cut(s) | 348 |
| CviJI | RGCY | 5 cut(s) | 47, 124, 147, 296, 377 |
| CviKI_1 | RGCY | 5 cut(s) | 47, 124, 147, 296, 377 |
| CviQI | GTAC | 1 cut(s) | 348 |
| DpnI | GATC | 2 cut(s) | 183, 256 |
| DpnII | GATC | 2 cut(s) | 181, 254 |
| DriI | GACNNNNNGTC | 1 cut(s) | 194 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 194 |
| Eco147I | AGGCCT | 1 cut(s) | 147 |
| Eco24I | GRGCYC | 1 cut(s) | 126 |
| Eco31I | GGTCTC | 1 cut(s) | 202 |
| Eco57I | CTGAAG | 1 cut(s) | 176 |
| EcoRI | GAATTC | 1 cut(s) | 465 |
| EcoT38I | GRGCYC | 1 cut(s) | 126 |
| FaiI | YATR | 5 cut(s) | 88, 90, 279, 372, 374 |
| FauNDI | CATATG | 2 cut(s) | 88, 372 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 3 cut(s) | 216, 228, 294 |
| FriOI | GRGCYC | 1 cut(s) | 126 |
| Fsp4HI | GCNGC | 3 cut(s) | 216, 228, 294 |
| GluI | GCNGC | 3 cut(s) | 216, 228, 294 |
| GsuI | CTGGAG | 1 cut(s) | 468 |
| HaeIII | GGCC | 1 cut(s) | 147 |
| HincII | GTYRAC | 1 cut(s) | 160 |
| HindII | GTYRAC | 1 cut(s) | 160 |
| HinfI | GANTC | 2 cut(s) | 400, 443 |
| HpaI | GTTAAC | 1 cut(s) | 160 |
| Hpy166II | GTNNAC | 2 cut(s) | 40, 160 |
| Hpy188III | TCNNGA | 1 cut(s) | 447 |
| Hpy8I | GTNNAC | 2 cut(s) | 40, 160 |
| HpyAV | CCTTC | 2 cut(s) | 427, 431 |
| HpyCH4III | ACNGT | 3 cut(s) | 142, 262, 286 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 86, 227, 344, 395 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 224 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| KspAI | GTTAAC | 1 cut(s) | 160 |
| Kzo9I | GATC | 2 cut(s) | 181, 254 |
| LmnI | GCTCC | 1 cut(s) | 290 |
| LpnPI | CCDG | 8 cut(s) | 179, 237, 259, 323, 330, 370, 417, 432 |
| Lsp1109I | GCAGC | 3 cut(s) | 227, 239, 305 |
| LweI | GCATC | 2 cut(s) | 22, 76 |
| MaeIII | GTNAC | 3 cut(s) | 97, 280, 412 |
| MalI | GATC | 2 cut(s) | 183, 256 |
| MboI | GATC | 2 cut(s) | 181, 254 |
| MboII | GAAGA | 1 cut(s) | 474 |
| MfeI | CAATTG | 1 cut(s) | 21 |
| MhlI | GDGCHC | 1 cut(s) | 126 |
| MluCI | AATT | 4 cut(s) | 21, 134, 239, 465 |
| MnlI | CCTC | 2 cut(s) | 421, 443 |
| MseI | TTAA | 2 cut(s) | 159, 242 |
| MunI | CAATTG | 1 cut(s) | 21 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 224 |
| NdeI | CATATG | 2 cut(s) | 88, 372 |
| NdeII | GATC | 2 cut(s) | 181, 254 |
| NmuCI | GTSAC | 2 cut(s) | 280, 412 |
| PceI | AGGCCT | 1 cut(s) | 147 |
| PfeI | GAWTC | 2 cut(s) | 400, 443 |
| PkrI | GCNGC | 3 cut(s) | 217, 229, 295 |
| RsaI | GTAC | 1 cut(s) | 349 |
| RsaNI | GTAC | 1 cut(s) | 348 |
| SaqAI | TTAA | 2 cut(s) | 159, 242 |
| SatI | GCNGC | 3 cut(s) | 216, 228, 294 |
| Sau3AI | GATC | 2 cut(s) | 181, 254 |
| SduI | GDGCHC | 1 cut(s) | 126 |
| SetI | ASST | 7 cut(s) | 16, 198, 278, 298, 333, 342, 349 |
| SfaNI | GCATC | 2 cut(s) | 22, 76 |
| Sse9I | AATT | 4 cut(s) | 21, 134, 239, 465 |
| SseBI | AGGCCT | 1 cut(s) | 147 |
| SspI | AATATT | 1 cut(s) | 222 |
| StuI | AGGCCT | 1 cut(s) | 147 |
| TaaI | ACNGT | 3 cut(s) | 142, 262, 286 |
| TasI | AATT | 4 cut(s) | 21, 134, 239, 465 |
| TfiI | GAWTC | 2 cut(s) | 400, 443 |
| Tru1I | TTAA | 2 cut(s) | 159, 242 |
| Tru9I | TTAA | 2 cut(s) | 159, 242 |
| TseFI | GTSAC | 2 cut(s) | 280, 412 |
| TseI | GCWGC | 3 cut(s) | 215, 227, 293 |
| Tsp45I | GTSAC | 2 cut(s) | 280, 412 |
| TspDTI | ATGAA | 1 cut(s) | 75 |
| XapI | RAATTY | 1 cut(s) | 465 |