Rw2G020140

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000747
Physical Location & Seq
Forward (+)
27304572 .. 27310649
6078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020140.1

Sequence Viewer

Length: 726 bp
ATGCAAATAGATTACAAGTTGCATTTCTTTTCATTTGTACATGAACTGTGTTCAGCTAATTATGCTTGCAAATGTACATGTATGTACATCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGATTGTGACTATATCTCCTGTTGAAAATTATGTACCAATTAATGAGATGCCGAAATTGGTGGAAAGTGCTGTTTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGTTGAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAATGTCTAGTATGTTTATAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAAAGAAATTGATAGTAGGCCTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAACAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGGTATGGGACTGTGGGAGCACCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGTTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGCCAAAGGCAGCTGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

241

Amino Acids

26.23

Weight (kDa)

9.34

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
Acc36I ACCTGC 3 cut(s) 570, 634, 641
AclWI GGATC 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 482
AfaI GTAC 5 cut(s) 39, 76, 86, 162, 655
AfiI CCNNNNNNNGG 2 cut(s) 263, 460
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 3 cut(s) 110, 152, 610
AhdI GACNNNNNGTC 1 cut(s) 500
AluBI AGCT 4 cut(s) 56, 104, 287, 716
AluI AGCT 4 cut(s) 56, 104, 287, 716
Alw21I GWGCWC 2 cut(s) 289, 601
Alw26I GTCTC 1 cut(s) 508
AlwI GGATC 1 cut(s) 568
AoxI GGCC 1 cut(s) 451
ApeKI GCWGC 3 cut(s) 206, 521, 713
AseI ATTAAT 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 219
BanII GRGCYC 2 cut(s) 289, 432
Bbv12I GWGCWC 2 cut(s) 289, 601
BbvI GCAGC 2 cut(s) 193, 533
BccI CCATC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 326
BclI TGATCA 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 508
BfaI CTAG 1 cut(s) 303
BfuAI ACCTGC 3 cut(s) 570, 634, 641
BisI GCNGC 3 cut(s) 207, 522, 714
BlsI GCNGC 3 cut(s) 208, 523, 715
BmeRI GACNNNNNGTC 1 cut(s) 500
BmsI GCATC 5 cut(s) 85, 165, 328, 382, 401
BplI GAGNNNNNCTC 2 cut(s) 414, 446
BpuEI CTTGAG 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 508
BsaJI CCNNGG 1 cut(s) 602
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 460
Bse1I ACTGG 1 cut(s) 562
BseCI ATCGAT 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 602
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 263, 460
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 562
BseXI GCAGC 2 cut(s) 193, 533
BshFI GGCC 1 cut(s) 453
BshVI ATCGAT 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 289, 601
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 2 cut(s) 263, 460
BsmAI GTCTC 1 cut(s) 508
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 1 cut(s) 453
Bso31I GGTCTC 1 cut(s) 508
Bsp1286I GDGCHC 3 cut(s) 289, 432, 601
Bsp1407I TGTACA 3 cut(s) 37, 74, 84
Bsp143I GATC 2 cut(s) 487, 560
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 1 cut(s) 388
BspDI ATCGAT 1 cut(s) 128
BspMI ACCTGC 3 cut(s) 570, 634, 641
BspPI GGATC 1 cut(s) 568
BspTNI GGTCTC 1 cut(s) 508
BsrGI TGTACA 3 cut(s) 37, 74, 84
BsrI ACTGG 1 cut(s) 562
BssECI CCNNGG 1 cut(s) 602
BssMI GATC 2 cut(s) 487, 560
BssT1I CCWWGG 1 cut(s) 602
Bst4CI ACNGT 3 cut(s) 48, 568, 592
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 3 cut(s) 37, 74, 84
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 2 cut(s) 490, 563
BstMAI GTCTC 1 cut(s) 508
BstMBI GATC 2 cut(s) 487, 560
BstMWI GCNNNNNNNGC 4 cut(s) 62, 203, 212, 530
BstNSI RCATGY 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 193, 533
Bsu15I ATCGAT 1 cut(s) 128
BsuRI GGCC 1 cut(s) 453
BsuTUI ATCGAT 1 cut(s) 128
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 3 cut(s) 570, 634, 641
Cac8I GCNNGC 1 cut(s) 67
ClaI ATCGAT 1 cut(s) 128
Csp6I GTAC 5 cut(s) 38, 75, 85, 161, 654
CviAII CATG 2 cut(s) 41, 78
CviQI GTAC 5 cut(s) 38, 75, 85, 161, 654
DdeI CTNAG 1 cut(s) 396
DpnI GATC 2 cut(s) 489, 562
DpnII GATC 2 cut(s) 487, 560
DriI GACNNNNNGTC 1 cut(s) 500
Eam1105I GACNNNNNGTC 1 cut(s) 500
Ecl136II GAGCTC 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 602
Eco147I AGGCCT 1 cut(s) 453
Eco24I GRGCYC 2 cut(s) 289, 432
Eco31I GGTCTC 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 602
EcoT38I GRGCYC 2 cut(s) 289, 432
ErhI CCWWGG 1 cut(s) 602
FaeI CATG 2 cut(s) 44, 81
FaqI GGGAC 1 cut(s) 601
FatI CATG 2 cut(s) 40, 77
FauNDI CATATG 1 cut(s) 678
FbaI TGATCA 1 cut(s) 487
Fnu4HI GCNGC 3 cut(s) 207, 522, 714
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 2 cut(s) 289, 432
Fsp4HI GCNGC 3 cut(s) 207, 522, 714
FspBI CTAG 1 cut(s) 303
GluI GCNGC 3 cut(s) 207, 522, 714
HaeIII GGCC 1 cut(s) 453
Hin1II CATG 2 cut(s) 44, 81
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HpaI GTTAAC 1 cut(s) 466
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 346, 466
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 2 cut(s) 107, 290
Hpy8I GTNNAC 2 cut(s) 346, 466
HpyAV CCTTC 2 cut(s) 261, 713
HpyCH4III ACNGT 3 cut(s) 48, 568, 592
HpyCH4V TGCA 7 cut(s) 4, 22, 69, 392, 533, 650, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 203, 212, 530
HpyF3I CTNAG 1 cut(s) 396
Hsp92II CATG 2 cut(s) 44, 81
Ksp22I TGATCA 1 cut(s) 487
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 2 cut(s) 487, 560
LmnI GCTCC 1 cut(s) 596
LpnPI CCDG 9 cut(s) 159, 225, 485, 543, 565, 624, 629, 636, 676
Lsp1109I GCAGC 2 cut(s) 193, 533
LweI GCATC 5 cut(s) 85, 165, 328, 382, 401
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 133, 403
MalI GATC 2 cut(s) 489, 562
MboI GATC 2 cut(s) 487, 560
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 3 cut(s) 289, 432, 601
MluCI AATT 7 cut(s) 58, 154, 165, 182, 327, 440, 545
MnlI CCTC 1 cut(s) 232
MseI TTAA 3 cut(s) 168, 465, 548
MspA1I CMGCKG 1 cut(s) 716
MunI CAATTG 1 cut(s) 327
MwoI GCNNNNNNNGC 4 cut(s) 62, 203, 212, 530
NdeI CATATG 1 cut(s) 678
NdeII GATC 2 cut(s) 487, 560
NlaIII CATG 2 cut(s) 44, 81
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 81
PceI AGGCCT 1 cut(s) 453
PciI ACATGT 1 cut(s) 77
PkrI GCNGC 3 cut(s) 208, 523, 715
PscI ACATGT 1 cut(s) 77
PshBI ATTAAT 1 cut(s) 168
PsiI TTATAA 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 5 cut(s) 39, 76, 86, 162, 655
RsaNI GTAC 5 cut(s) 38, 75, 85, 161, 654
SacI GAGCTC 1 cut(s) 289
SaqAI TTAA 3 cut(s) 168, 465, 548
SatI GCNGC 3 cut(s) 207, 522, 714
Sau3AI GATC 2 cut(s) 487, 560
SduI GDGCHC 3 cut(s) 289, 432, 601
SfaNI GCATC 5 cut(s) 85, 165, 328, 382, 401
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
Sse9I AATT 7 cut(s) 58, 154, 165, 182, 327, 440, 545
SseBI AGGCCT 1 cut(s) 453
SspI AATATT 1 cut(s) 528
SspMI CTAG 1 cut(s) 303
SstI GAGCTC 1 cut(s) 289
StuI AGGCCT 1 cut(s) 453
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 3 cut(s) 48, 568, 592
TaqI TCGA 1 cut(s) 128
TasI AATT 7 cut(s) 58, 154, 165, 182, 327, 440, 545
TatI WGTACW 3 cut(s) 37, 74, 84
Tru1I TTAA 3 cut(s) 168, 465, 548
Tru9I TTAA 3 cut(s) 168, 465, 548
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 3 cut(s) 206, 521, 713
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 21, 57, 381
TspRI CASTG 1 cut(s) 465
VspI ATTAAT 1 cut(s) 168
XceI RCATGY 1 cut(s) 81
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.