Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001647.1

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

39925 .. 40260

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001647.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgcacacacatttctttaccaaagaagggacagggtattttagtatctgcttggaagacttcaaggtgggatgtgaagctaaagtgatgccctgtaagcataggtttcatcatccttgtattgcagctgagtgggtcgtcaagcgtgcatcatgtccgctctgtagactcgatttgagagatcaactagaatgtctcatccctaaccagcctgacgagcctgatcagcatgcgtcctcctggccttacagatacacttggatgacagatagtctgtactttaaggctcggatggaatactgtgaaggatggtatgctggccaagatccaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

111

Amino Acids

13.11

Weight (kDa)

6.03

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	319
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	64
AhdI	GACNNNNNGTC	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	2 cut(s)	80, 128
AluI	AGCT	2 cut(s)	80, 128
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	242, 319
ApeKI	GCWGC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	2 cut(s)	286, 303
BciT130I	CCWGG	1 cut(s)	241
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	241
BmeRI	GACNNNNNGTC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	2 cut(s)	78, 158
BpiI	GAAGAC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	241
BseGI	GGATG	6 cut(s)	77, 112, 198, 267, 297, 314
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	137
BshFI	GGCC	2 cut(s)	244, 321
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	244, 321
Bsp143I	GATC	3 cut(s)	181, 223, 325
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	2 cut(s)	244, 321
BspCNI	CTCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	160
BssMI	GATC	3 cut(s)	181, 223, 325
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	147, 231, 319
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	6 cut(s)	77, 112, 198, 267, 297, 314
BstKTI	GATC	3 cut(s)	184, 226, 328
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	3 cut(s)	181, 223, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 217, 226
BstNI	CCWGG	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	244, 321
BtsCI	GGATG	6 cut(s)	77, 112, 198, 267, 297, 314
Cac8I	GCNNGC	3 cut(s)	147, 231, 319
CseI	GACGC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	2 cut(s)	153, 230
CviJI	RGCY	7 cut(s)	80, 128, 211, 220, 244, 287, 321
CviKI_1	RGCY	7 cut(s)	80, 128, 211, 220, 244, 287, 321
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	3 cut(s)	183, 225, 327
DpnII	GATC	3 cut(s)	181, 223, 325
DriI	GACNNNNNGTC	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	319
Eam1105I	GACNNNNNGTC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	239
FaeI	CATG	2 cut(s)	156, 233
FaiI	YATR	4 cut(s)	102, 154, 231, 315
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	2 cut(s)	152, 229
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	6 cut(s)	84, 99, 185, 274, 304, 321
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	244, 321
HgaI	GACGC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	156, 233
HinfI	GANTC	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	291
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	20, 299
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	3 cut(s)	4, 125, 149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 217, 226
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	156, 233
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	181, 223, 325
LpnPI	CCDG	8 cut(s)	18, 106, 221, 225, 226, 234, 253, 303
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	2 cut(s)	78, 158
MaeI	CTAG	1 cut(s)	188
MalI	GATC	3 cut(s)	183, 225, 327
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	3 cut(s)	181, 223, 325
MboII	GAAGA	1 cut(s)	68
MflI	RGATCY	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	321
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	1 cut(s)	247
Mox20I	TGGCCA	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	97, 217, 226
NdeII	GATC	3 cut(s)	181, 223, 325
NlaIII	CATG	2 cut(s)	156, 233
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	3 cut(s)	181, 223, 325
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	241
SetI	ASST	4 cut(s)	69, 82, 107, 130
SfaNI	GCATC	2 cut(s)	78, 158
SfcI	CTRYAG	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	260
SphI	GCATGC	1 cut(s)	233
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	171
TatI	WGTACW	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	98
XceI	RCATGY	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.