Rw5G031890

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000747
Physical Location & Seq
Reverse (-)
53254075 .. 53259670
5596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G031890.1

Sequence Viewer

Length: 759 bp
ATGCAAATAGATTACAAGTTGCATTTCTTTTCATTTGTACATGAACTGTGTTCAGGTTTCATGCACTCTGAACCAGGTTATCAATATGATCCTGCGCAATCAAAGATTGCATTTGTTATGTTCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGATTGTGACTATATCTCCTGTTGAAAATTATGTACCAATTAATGAGATGCATAGCAATTGGTGGAAAGTGCTGTTGTGCTGCCCTGCTGAAAGTGTTTCACCAAATGTTGAGGATAAAGATGGCTCTCCTAACAATGAAAGGGTGTATGTAAATAGAGCTCAAGATGTAATGTCTAGTATGTTTGTAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAAAGAAATTGATAGTAGGCCTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGGTATGGGACTGTGGGAGCACCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGTTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGCCAAAGGCAGCTGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

252

Amino Acids

27.83

Weight (kDa)

9.29

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 96
Acc36I ACCTGC 3 cut(s) 603, 667, 674
AclWI GGATC 2 cut(s) 83, 601
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 3 cut(s) 39, 195, 688
AfiI CCNNNNNNNGG 1 cut(s) 493
AgsI TTSAA 4 cut(s) 124, 143, 185, 643
AhdI GACNNNNNGTC 1 cut(s) 533
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 3 cut(s) 137, 320, 749
AluI AGCT 3 cut(s) 137, 320, 749
Alw21I GWGCWC 2 cut(s) 322, 634
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 2 cut(s) 83, 601
AoxI GGCC 1 cut(s) 484
ApeKI GCWGC 4 cut(s) 240, 554, 566, 746
AseI ATTAAT 1 cut(s) 201
AspLEI GCGC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 252
BanII GRGCYC 2 cut(s) 322, 465
Bbv12I GWGCWC 2 cut(s) 322, 634
BbvI GCAGC 3 cut(s) 227, 566, 578
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 1 cut(s) 75
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 1 cut(s) 336
BfuAI ACCTGC 3 cut(s) 603, 667, 674
BisI GCNGC 4 cut(s) 241, 555, 567, 747
BlsI GCNGC 4 cut(s) 242, 556, 568, 748
Bme1390I CCNGG 1 cut(s) 75
BmeRI GACNNNNNGTC 1 cut(s) 533
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 5 cut(s) 118, 198, 361, 415, 434
BplI GAGNNNNNCTC 2 cut(s) 447, 479
BpuEI CTTGAG 1 cut(s) 306
Bsa29I ATCGAT 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 1 cut(s) 635
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse1I ACTGG 1 cut(s) 595
BseBI CCWGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 635
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 595
BseXI GCAGC 3 cut(s) 227, 566, 578
BshFI GGCC 1 cut(s) 486
BshVI ATCGAT 1 cut(s) 161
BsiHKAI GWGCWC 2 cut(s) 322, 634
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 1 cut(s) 493
BsmAI GTCTC 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 634
BsnI GGCC 1 cut(s) 486
Bso31I GGTCTC 1 cut(s) 541
Bsp1286I GDGCHC 3 cut(s) 322, 465, 634
Bsp1407I TGTACA 1 cut(s) 37
Bsp143I GATC 3 cut(s) 88, 520, 593
BspANI GGCC 1 cut(s) 486
BspCNI CTCAG 1 cut(s) 421
BspDI ATCGAT 1 cut(s) 161
BspMI ACCTGC 3 cut(s) 603, 667, 674
BspPI GGATC 2 cut(s) 83, 601
BspTNI GGTCTC 1 cut(s) 541
BsrGI TGTACA 1 cut(s) 37
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 1 cut(s) 635
BssMI GATC 3 cut(s) 88, 520, 593
BssT1I CCWWGG 1 cut(s) 635
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 48, 601, 625
BstAPI GCANNNNNTGC 1 cut(s) 563
BstAUI TGTACA 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 133
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 3 cut(s) 91, 523, 596
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 3 cut(s) 88, 520, 593
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstV1I GCAGC 3 cut(s) 227, 566, 578
Bsu15I ATCGAT 1 cut(s) 161
BsuRI GGCC 1 cut(s) 486
BsuTUI ATCGAT 1 cut(s) 161
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 498
BveI ACCTGC 3 cut(s) 603, 667, 674
CfoI GCGC 1 cut(s) 97
ClaI ATCGAT 1 cut(s) 161
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 3 cut(s) 38, 194, 687
CviAII CATG 2 cut(s) 41, 61
CviJI RGCY 9 cut(s) 137, 285, 320, 386, 463, 486, 716, 739, 749
CviKI_1 RGCY 9 cut(s) 137, 285, 320, 386, 463, 486, 716, 739, 749
CviQI GTAC 3 cut(s) 38, 194, 687
DdeI CTNAG 1 cut(s) 429
DpnI GATC 3 cut(s) 90, 522, 595
DpnII GATC 3 cut(s) 88, 520, 593
DriI GACNNNNNGTC 1 cut(s) 533
Eam1105I GACNNNNNGTC 1 cut(s) 533
Ecl136II GAGCTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 635
Eco147I AGGCCT 1 cut(s) 486
Eco24I GRGCYC 2 cut(s) 322, 465
Eco31I GGTCTC 1 cut(s) 541
Eco53kI GAGCTC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 635
EcoT22I ATGCAT 1 cut(s) 213
EcoT38I GRGCYC 2 cut(s) 322, 465
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 2 cut(s) 44, 64
FaqI GGGAC 1 cut(s) 634
FatI CATG 2 cut(s) 40, 60
FauNDI CATATG 1 cut(s) 711
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 241, 555, 567, 747
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 2 cut(s) 322, 465
Fsp4HI GCNGC 4 cut(s) 241, 555, 567, 747
FspBI CTAG 1 cut(s) 336
FspI TGCGCA 1 cut(s) 96
GlaI GCGC 1 cut(s) 96
GluI GCNGC 4 cut(s) 241, 555, 567, 747
HaeIII GGCC 1 cut(s) 486
HhaI GCGC 1 cut(s) 97
Hin1II CATG 2 cut(s) 44, 64
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HpaI GTTAAC 1 cut(s) 499
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 2 cut(s) 379, 499
Hpy188I TCNGA 2 cut(s) 70, 430
Hpy188III TCNNGA 2 cut(s) 140, 323
Hpy8I GTNNAC 2 cut(s) 379, 499
HpyAV CCTTC 1 cut(s) 746
HpyCH4III ACNGT 3 cut(s) 48, 601, 625
HpyCH4V TGCA 9 cut(s) 4, 22, 64, 110, 211, 425, 566, 683, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 2 cut(s) 44, 64
HspAI GCGC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 3 cut(s) 88, 520, 593
LmnI GCTCC 1 cut(s) 629
Lsp1109I GCAGC 3 cut(s) 227, 566, 578
LweI GCATC 5 cut(s) 118, 198, 361, 415, 434
MabI ACCWGGT 1 cut(s) 73
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 166, 436
MalI GATC 3 cut(s) 90, 522, 595
MboI GATC 3 cut(s) 88, 520, 593
MfeI CAATTG 2 cut(s) 217, 360
MhlI GDGCHC 3 cut(s) 322, 465, 634
MluCI AATT 6 cut(s) 187, 198, 217, 360, 473, 578
MnlI CCTC 1 cut(s) 265
Mph1103I ATGCAT 1 cut(s) 213
MseI TTAA 3 cut(s) 201, 498, 581
MspA1I CMGCKG 1 cut(s) 749
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 2 cut(s) 217, 360
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 563
NdeI CATATG 1 cut(s) 711
NdeII GATC 3 cut(s) 88, 520, 593
NlaIII CATG 2 cut(s) 44, 64
NmuCI GTSAC 1 cut(s) 166
NsbI TGCGCA 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 213
PceI AGGCCT 1 cut(s) 486
PkrI GCNGC 4 cut(s) 242, 556, 568, 748
PshBI ATTAAT 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 749
RsaI GTAC 3 cut(s) 39, 195, 688
RsaNI GTAC 3 cut(s) 38, 194, 687
SacI GAGCTC 1 cut(s) 322
SaqAI TTAA 3 cut(s) 201, 498, 581
SatI GCNGC 4 cut(s) 241, 555, 567, 747
Sau3AI GATC 3 cut(s) 88, 520, 593
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 3 cut(s) 322, 465, 634
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 5 cut(s) 118, 198, 361, 415, 434
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
Sse9I AATT 6 cut(s) 187, 198, 217, 360, 473, 578
SseBI AGGCCT 1 cut(s) 486
SspI AATATT 1 cut(s) 561
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 322
StuI AGGCCT 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 3 cut(s) 48, 601, 625
TaqI TCGA 1 cut(s) 161
TasI AATT 6 cut(s) 187, 198, 217, 360, 473, 578
TatI WGTACW 1 cut(s) 37
Tru1I TTAA 3 cut(s) 201, 498, 581
Tru9I TTAA 3 cut(s) 201, 498, 581
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 4 cut(s) 240, 554, 566, 746
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 5 cut(s) 21, 49, 57, 312, 414
TspRI CASTG 1 cut(s) 498
VspI ATTAAT 1 cut(s) 201
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.