Rorug03G0284900

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000747
Physical Location & Seq
Forward (+)
28649304 .. 28650652
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0284900.1

Sequence Viewer

Length: 633 bp
ATGGCGCCCAGAAAGAAACATGGGAACAACAACTCCGTCCGTCCTTCCAAGTCTGGCCTTCACCCTCAACACCAACCCCAAGATTGCTATGAAGGGGAACGTCTGGATCATCTTCTCCAATCTATTCAGAGAAAAATAGAGTCAGCTAGACTACTGGATAATTCCTTGCCCGAAAAGATATGGTTCAAGCTACAATTTGCAGTTGGGGTGAATGATGTGACTCGTGTTCTTGAACGCATGAAACCAGTGACATCACCAATGGCAGCAGGCTTAGCATCCGAGTGTAACCCCCCTGCTCCTCCTCCTAAAGCTAAAGCAGCATCTAATGAGCTTCAGGCTGTGCTGATAGCCGCTGATTCCAATCCGCGGTGGCTCACGAAGCATCTGCCAAGCTTGGCCCTTTCTAGGAATGTCCCGTTGATCTTTCTCAAGGATAACAAGGGGGCTTCTTTAAGATTGGGTCAGCTTGTTAAACTTAAAACTGCCATTGCTATTGGAGTTAAGGCCAAAGGAAATGCCATCAATCAACTTGTTGACGAAATTCTTAGTGGCAGCAGTCAAGGTCATCTTGGAACCGAATGTCTCAATTCAACTCAACTGCTTCCTGCACCTAAAGGGCAAGTGCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

210

Amino Acids

22.81

Weight (kDa)

9.93

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 367
AciI CCGC 3 cut(s) 351, 365, 367
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 540
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 366, 405
AgsI TTSAA 3 cut(s) 187, 233, 591
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 6 cut(s) 146, 190, 311, 331, 393, 466
AluI AGCT 6 cut(s) 146, 190, 311, 331, 393, 466
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 1 cut(s) 114
AoxI GGCC 3 cut(s) 55, 396, 504
ApeKI GCWGC 3 cut(s) 263, 317, 552
ApoI RAATTY 1 cut(s) 540
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 3 cut(s) 53, 220, 246
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 222
BbvI GCAGC 3 cut(s) 275, 329, 564
BccI CCATC 1 cut(s) 527
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 2 cut(s) 147, 405
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 4 cut(s) 264, 318, 351, 553
BlpI GCTNAGC 1 cut(s) 271
BlsI GCNGC 4 cut(s) 265, 319, 352, 554
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 2 cut(s) 6, 574
BmsI GCATC 3 cut(s) 284, 329, 391
Bpu1102I GCTNAGC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 405
Bse1I ACTGG 2 cut(s) 159, 245
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 275
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 366, 405
BseMI GCAATG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 159, 245
BseRI GAGGAG 2 cut(s) 288, 291
BseXI GCAGC 3 cut(s) 275, 329, 564
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 1 cut(s) 367
BshFI GGCC 3 cut(s) 57, 398, 506
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 366, 405
BsmAI GTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 3 cut(s) 57, 398, 506
Bsp143I GATC 2 cut(s) 106, 420
Bsp1720I GCTNAGC 1 cut(s) 271
BspACI CCGC 3 cut(s) 351, 365, 367
BspANI GGCC 3 cut(s) 57, 398, 506
BspFNI CGCG 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 6, 574
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 2 cut(s) 159, 245
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 2 cut(s) 106, 420
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 271, 545
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 1 cut(s) 275
BstFNI CGCG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 109, 423
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 2 cut(s) 106, 420
BstMWI GCNNNNNNNGC 3 cut(s) 272, 317, 379
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 3 cut(s) 275, 329, 564
BsuRI GGCC 3 cut(s) 57, 398, 506
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 397
Cfr42I CCGCGG 1 cut(s) 368
CviAII CATG 2 cut(s) 20, 238
DdeI CTNAG 2 cut(s) 271, 545
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 108, 422
DpnII GATC 2 cut(s) 106, 420
Eco57I CTGAAG 1 cut(s) 317
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 23, 241
FaiI YATR 4 cut(s) 21, 90, 181, 239
FalI AAGNNNNNCTT 2 cut(s) 552, 584
FaqI GGGAC 1 cut(s) 398
FatI CATG 2 cut(s) 19, 237
Fnu4HI GCNGC 4 cut(s) 264, 318, 351, 553
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 4 cut(s) 264, 318, 351, 553
FspBI CTAG 2 cut(s) 147, 405
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 264, 318, 351, 553
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 57, 398, 506
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 23, 241
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 1 cut(s) 391
HinfI GANTC 3 cut(s) 140, 220, 356
HphI GGTGA 3 cut(s) 53, 220, 246
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 2 cut(s) 129, 280
Hpy188III TCNNGA 3 cut(s) 104, 230, 376
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 3 cut(s) 54, 68, 86
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 200, 608, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 317, 379
HpyF3I CTNAG 2 cut(s) 271, 545
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 23, 241
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KspI CCGCGG 1 cut(s) 368
Kzo9I GATC 2 cut(s) 106, 420
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 9 cut(s) 22, 39, 89, 140, 252, 258, 306, 320, 618
Lsp1109I GCAGC 3 cut(s) 275, 329, 564
LweI GCATC 3 cut(s) 284, 329, 391
MaeI CTAG 2 cut(s) 147, 405
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 3 cut(s) 217, 247, 284
MalI GATC 2 cut(s) 108, 422
MboI GATC 2 cut(s) 106, 420
MboII GAAGA 1 cut(s) 104
MluCI AATT 4 cut(s) 160, 194, 540, 586
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 149, 214
MnlI CCTC 3 cut(s) 75, 309, 312
MseI TTAA 4 cut(s) 452, 471, 477, 501
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 2 cut(s) 353, 367
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 3 cut(s) 272, 317, 379
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 106, 420
NlaIII CATG 2 cut(s) 23, 241
NlaIV GGNNCC 2 cut(s) 6, 574
NmuCI GTSAC 2 cut(s) 217, 247
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 4 cut(s) 265, 319, 352, 554
PleI GAGTC 2 cut(s) 148, 214
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 148, 214
PspN4I GGNNCC 2 cut(s) 6, 574
PspPI GGNCC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 280
SacII CCGCGG 1 cut(s) 368
SaqAI TTAA 4 cut(s) 452, 471, 477, 501
SatI GCNGC 4 cut(s) 264, 318, 351, 553
Sau3AI GATC 2 cut(s) 106, 420
Sau96I GGNCC 1 cut(s) 397
SchI GAGTC 2 cut(s) 149, 214
SetI ASST 9 cut(s) 103, 148, 192, 313, 333, 395, 468, 565, 613
SfaNI GCATC 3 cut(s) 284, 329, 391
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 368
SgrBI CCGCGG 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 4 cut(s) 160, 194, 540, 586
SsiI CCGC 3 cut(s) 351, 365, 367
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 147, 405
TaiI ACGT 1 cut(s) 103
TasI AATT 4 cut(s) 160, 194, 540, 586
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 4 cut(s) 452, 471, 477, 501
Tru9I TTAA 4 cut(s) 452, 471, 477, 501
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 2 cut(s) 217, 247
TseI GCWGC 3 cut(s) 263, 317, 552
Tsp45I GTSAC 2 cut(s) 217, 247
TspDTI ATGAA 2 cut(s) 105, 254
TspGWI ACGGA 2 cut(s) 25, 29
TspRI CASTG 1 cut(s) 252
XapI RAATTY 1 cut(s) 540
XspI CTAG 2 cut(s) 147, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.