RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 137 |
| AcsI | RAATTY | 2 cut(s) | 190, 257 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 129 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 50 |
| AluBI | AGCT | 2 cut(s) | 278, 314 |
| AluI | AGCT | 2 cut(s) | 278, 314 |
| Alw26I | GTCTC | 2 cut(s) | 220, 403 |
| ApeKI | GCWGC | 2 cut(s) | 233, 311 |
| ApoI | RAATTY | 2 cut(s) | 190, 257 |
| BbvI | GCAGC | 2 cut(s) | 245, 323 |
| BclI | TGATCA | 1 cut(s) | 199 |
| BcoDI | GTCTC | 2 cut(s) | 220, 403 |
| BisI | GCNGC | 2 cut(s) | 234, 312 |
| BlsI | GCNGC | 2 cut(s) | 235, 313 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 50 |
| BmsI | GCATC | 2 cut(s) | 94, 113 |
| Bsa29I | ATCGAT | 1 cut(s) | 88 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseCI | ATCGAT | 1 cut(s) | 88 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseXI | GCAGC | 2 cut(s) | 245, 323 |
| BshVI | ATCGAT | 1 cut(s) | 88 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BsmAI | GTCTC | 2 cut(s) | 220, 403 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspACI | CCGC | 1 cut(s) | 137 |
| BspCNI | CTCAG | 1 cut(s) | 230 |
| BspDI | ATCGAT | 1 cut(s) | 88 |
| BssMI | GATC | 1 cut(s) | 199 |
| Bst4CI | ACNGT | 2 cut(s) | 160, 304 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 242 |
| BstDEI | CTNAG | 1 cut(s) | 217 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 127 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMAI | GTCTC | 2 cut(s) | 220, 403 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 242 |
| BstV1I | GCAGC | 2 cut(s) | 245, 323 |
| Bsu15I | ATCGAT | 1 cut(s) | 88 |
| BsuTUI | ATCGAT | 1 cut(s) | 88 |
| ClaI | ATCGAT | 1 cut(s) | 88 |
| CviAII | CATG | 1 cut(s) | 212 |
| CviJI | RGCY | 8 cut(s) | 38, 65, 142, 208, 278, 314, 319, 395 |
| CviKI_1 | RGCY | 8 cut(s) | 38, 65, 142, 208, 278, 314, 319, 395 |
| DdeI | CTNAG | 1 cut(s) | 217 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| DriI | GACNNNNNGTC | 1 cut(s) | 50 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 50 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 127 |
| FaeI | CATG | 1 cut(s) | 215 |
| FaiI | YATR | 5 cut(s) | 20, 213, 297, 390, 392 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 126, 158 |
| FatI | CATG | 1 cut(s) | 211 |
| FauI | CCCGC | 1 cut(s) | 130 |
| FauNDI | CATATG | 1 cut(s) | 390 |
| FbaI | TGATCA | 1 cut(s) | 199 |
| Fnu4HI | GCNGC | 2 cut(s) | 234, 312 |
| Fsp4HI | GCNGC | 2 cut(s) | 234, 312 |
| GluI | GCNGC | 2 cut(s) | 234, 312 |
| Hin1II | CATG | 1 cut(s) | 215 |
| Hpy166II | GTNNAC | 2 cut(s) | 8, 58 |
| Hpy188I | TCNGA | 3 cut(s) | 109, 204, 220 |
| Hpy188III | TCNNGA | 1 cut(s) | 55 |
| Hpy8I | GTNNAC | 2 cut(s) | 8, 58 |
| HpyAV | CCTTC | 1 cut(s) | 106 |
| HpyCH4III | ACNGT | 2 cut(s) | 160, 304 |
| HpyCH4V | TGCA | 6 cut(s) | 26, 104, 245, 362, 409, 417 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 242 |
| HpyF3I | CTNAG | 1 cut(s) | 217 |
| Hsp92II | CATG | 1 cut(s) | 215 |
| Ksp22I | TGATCA | 1 cut(s) | 199 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| LmnI | GCTCC | 1 cut(s) | 308 |
| LpnPI | CCDG | 4 cut(s) | 115, 336, 341, 388 |
| Lsp1109I | GCAGC | 2 cut(s) | 245, 323 |
| LweI | GCATC | 2 cut(s) | 94, 113 |
| MaeIII | GTNAC | 2 cut(s) | 298, 364 |
| MalI | GATC | 1 cut(s) | 201 |
| MboI | GATC | 1 cut(s) | 199 |
| MluCI | AATT | 3 cut(s) | 152, 190, 257 |
| MmeI | TCCRAC | 1 cut(s) | 286 |
| MnlI | CCTC | 2 cut(s) | 198, 371 |
| MseI | TTAA | 3 cut(s) | 155, 177, 261 |
| MslI | CAYNNNNRTG | 1 cut(s) | 170 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 242 |
| NdeI | CATATG | 1 cut(s) | 390 |
| NdeII | GATC | 1 cut(s) | 199 |
| NlaIII | CATG | 1 cut(s) | 215 |
| NmuCI | GTSAC | 1 cut(s) | 298 |
| PkrI | GCNGC | 2 cut(s) | 235, 313 |
| RseI | CAYNNNNRTG | 1 cut(s) | 170 |
| SaqAI | TTAA | 3 cut(s) | 155, 177, 261 |
| SatI | GCNGC | 2 cut(s) | 234, 312 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| SetI | ASST | 5 cut(s) | 117, 280, 296, 316, 360 |
| SfaNI | GCATC | 2 cut(s) | 94, 113 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 170 |
| Sse9I | AATT | 3 cut(s) | 152, 190, 257 |
| SsiI | CCGC | 1 cut(s) | 137 |
| SspI | AATATT | 1 cut(s) | 240 |
| TaaI | ACNGT | 2 cut(s) | 160, 304 |
| TaqI | TCGA | 1 cut(s) | 88 |
| TasI | AATT | 3 cut(s) | 152, 190, 257 |
| Tru1I | TTAA | 3 cut(s) | 155, 177, 261 |
| Tru9I | TTAA | 3 cut(s) | 155, 177, 261 |
| TseFI | GTSAC | 1 cut(s) | 298 |
| TseI | GCWGC | 2 cut(s) | 233, 311 |
| Tsp45I | GTSAC | 1 cut(s) | 298 |
| TspDTI | ATGAA | 2 cut(s) | 93, 200 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 127 |
| XapI | RAATTY | 2 cut(s) | 190, 257 |