Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000197.1

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

189121 .. 189854

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000197.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgtgcagtgatcctgcgcaatcaaagattgcatttgttatgttcaaggatgccaaagctcttgaaatcgcactcttgttatcggataaagatggctctcctaacaatggaagggtgtatgtaaatagagctcaagatgtaatgtctagtatgtttgtaaaaggttcagcaattggacaagatgccgtgaacaaggctaaagcatttgatgaaaagcatcggttgagagaaagtgcatctgagaaagtaacttcctttgacaagagagtggggctcacaaagaaattgatagtaggcctttcagtggttaacgagaaagtgaagtctgttgatcaaagacttcaggtctcaaataaaacaatggcagcaatatttgcagcagagagaaaattaaatgatactggatcaactgtcaaaacaagcaggtatgtgatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

145

Amino Acids

15.89

Weight (kDa)

9.78

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	18
Acc36I	ACCTGC	1 cut(s)	414
AclWI	GGATC	2 cut(s)	5, 412
AcuI	CTGAAG	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	107, 304
AgsI	TTSAA	2 cut(s)	46, 65
AhdI	GACNNNNNGTC	1 cut(s)	344
AluBI	AGCT	2 cut(s)	59, 131
AluI	AGCT	2 cut(s)	59, 131
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	5, 412
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	365, 377
AspLEI	GCGC	1 cut(s)	19
BanII	GRGCYC	2 cut(s)	133, 276
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	377, 389
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	414
BisI	GCNGC	2 cut(s)	366, 378
BlsI	GCNGC	2 cut(s)	367, 379
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmsI	GCATC	4 cut(s)	40, 172, 226, 245
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpuEI	CTTGAG	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 304
Bse1I	ACTGG	1 cut(s)	406
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	107, 304
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	377, 389
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	107, 304
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	297
Bso31I	GGTCTC	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	133, 276
Bsp143I	GATC	3 cut(s)	10, 331, 404
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	5, 412
BspTNI	GGTCTC	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	406
BssMI	GATC	3 cut(s)	10, 331, 404
Bst4CI	ACNGT	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	13, 334, 407
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	3 cut(s)	10, 331, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	377, 389
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 309
BveI	ACCTGC	1 cut(s)	414
CfoI	GCGC	1 cut(s)	19
CviJI	RGCY	6 cut(s)	59, 96, 131, 197, 274, 297
CviKI_1	RGCY	6 cut(s)	59, 96, 131, 197, 274, 297
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	3 cut(s)	12, 333, 406
DpnII	GATC	3 cut(s)	10, 331, 404
DriI	GACNNNNNGTC	1 cut(s)	344
Eam1105I	GACNNNNNGTC	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	131
Eco147I	AGGCCT	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	133, 276
Eco31I	GGTCTC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	131
EcoT38I	GRGCYC	2 cut(s)	133, 276
FaiI	YATR	5 cut(s)	41, 120, 152, 429, 436
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	366, 378
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	2 cut(s)	133, 276
Fsp4HI	GCNGC	2 cut(s)	366, 378
FspBI	CTAG	1 cut(s)	147
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	366, 378
HaeIII	GGCC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HpaI	GTTAAC	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	190, 310
Hpy188I	TCNGA	2 cut(s)	85, 241
Hpy188III	TCNNGA	2 cut(s)	62, 134
Hpy8I	GTNNAC	2 cut(s)	190, 310
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	4 cut(s)	6, 32, 236, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	240
HspAI	GCGC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	331
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	10, 331, 404
LpnPI	CCDG	4 cut(s)	27, 329, 387, 409
Lsp1109I	GCAGC	2 cut(s)	377, 389
LweI	GCATC	4 cut(s)	40, 172, 226, 245
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	3 cut(s)	12, 333, 406
MboI	GATC	3 cut(s)	10, 331, 404
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	133, 276
MluCI	AATT	3 cut(s)	171, 284, 389
MseI	TTAA	2 cut(s)	309, 392
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	3 cut(s)	10, 331, 404
NsbI	TGCGCA	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	367, 379
Psp124BI	GAGCTC	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	309, 392
SatI	GCNGC	2 cut(s)	366, 378
Sau3AI	GATC	3 cut(s)	10, 331, 404
SduI	GDGCHC	2 cut(s)	133, 276
SetI	ASST	5 cut(s)	61, 133, 166, 348, 428
SfaNI	GCATC	4 cut(s)	40, 172, 226, 245
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	171, 284, 389
SseBI	AGGCCT	1 cut(s)	297
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	133
StuI	AGGCCT	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	412
TasI	AATT	3 cut(s)	171, 284, 389
Tru1I	TTAA	2 cut(s)	309, 392
Tru9I	TTAA	2 cut(s)	309, 392
TscAI	CASTG	2 cut(s)	13, 309
TseI	GCWGC	2 cut(s)	365, 377
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	13, 309
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.