RchiOBHm_Chr6g0266381

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000747
Physical Location & Seq
Forward (+)
22655580 .. 22656301
722 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23889

Sequence Viewer

Length: 264 bp
ATGGTCGATAAGATTGTGACTATATCTCCTGTTGAAAATTATGTACTAAACAATGAGATGCTAGAAGTAAGAATGGTGGAAAGTGCTGTTTGTGCTGCCCATACTGAAAATGTTTCACCAAATGCTGAGAGAACTTATGACGATATTCCAGGGTCTTTGAGTATGATAAAGATGGATCTCCTAACAATGGAAAGGTGTATATATGTCAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGATTCAGCAATTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

87

Amino Acids

9.67

Weight (kDa)

4.49

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 183
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 1 cut(s) 35
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 108
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 150
BfaI CTAG 2 cut(s) 62, 231
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 118
BspPI GGATC 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 126
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
Csp6I GTAC 1 cut(s) 44
CviJI RGCY 1 cut(s) 215
CviKI_1 RGCY 1 cut(s) 215
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 217
FaiI YATR 9 cut(s) 23, 42, 102, 138, 164, 200, 202, 204, 236
Fnu4HI GCNGC 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 62, 231
GluI GCNGC 1 cut(s) 96
HinfI GANTC 1 cut(s) 248
HphI GGTGA 1 cut(s) 108
Hpy188III TCNNGA 1 cut(s) 218
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 126
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 3 cut(s) 42, 135, 162
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 48
MaeI CTAG 2 cut(s) 62, 231
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 2 cut(s) 37, 255
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SacI GAGCTC 1 cut(s) 217
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 217
SetI ASST 2 cut(s) 197, 217
SfaNI GCATC 1 cut(s) 48
SgeI CNNG 6 cut(s) 41, 74, 161, 162, 230, 243
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 2 cut(s) 37, 255
SspMI CTAG 2 cut(s) 62, 231
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 148
TaqI TCGA 1 cut(s) 6
TasI AATT 2 cut(s) 37, 255
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 1 cut(s) 248
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 16
XspI CTAG 2 cut(s) 62, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.