Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

70171765 .. 70174061

Gene Structure 2297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG526400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGGTATGTGACTGTGGGAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGTTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTACAAAGGTAATGCTTACAGACTTTGGCTACATGAAGAAAAGAAGGGGGAAGAAAGGGAAGGAGAAGGGAGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

86

Amino Acids

9.39

Weight (kDa)

10.42

Isoelectric Point (pI)

8.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	54, 118, 125
AclWI	GGATC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
AlwI	GGATC	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	5, 17, 83
BbvI	GCAGC	3 cut(s)	17, 29, 95
BfuAI	ACCTGC	3 cut(s)	54, 118, 125
BisI	GCNGC	3 cut(s)	6, 18, 84
BlsI	GCNGC	3 cut(s)	7, 19, 85
Bse1I	ACTGG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	17, 29, 95
Bsp143I	GATC	1 cut(s)	44
BspMI	ACCTGC	3 cut(s)	54, 118, 125
BspPI	GGATC	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	52, 76
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	17, 29, 95
BveI	ACCTGC	3 cut(s)	54, 118, 125
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	3 cut(s)	86, 167, 210
CviKI_1	RGCY	3 cut(s)	86, 167, 210
CviQI	GTAC	1 cut(s)	138
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
FaeI	CATG	1 cut(s)	217
FaiI	YATR	4 cut(s)	69, 162, 164, 215
FatI	CATG	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	6, 18, 84
Fsp4HI	GCNGC	3 cut(s)	6, 18, 84
GluI	GCNGC	3 cut(s)	6, 18, 84
Hin1II	CATG	1 cut(s)	217
HpyAV	CCTTC	3 cut(s)	219, 235, 241
HpyCH4III	ACNGT	2 cut(s)	52, 76
HpyCH4V	TGCA	2 cut(s)	17, 134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	6 cut(s)	27, 49, 108, 113, 120, 160
Lsp1109I	GCAGC	3 cut(s)	17, 29, 95
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	2 cut(s)	229, 244
MluCI	AATT	1 cut(s)	29
MnlI	CCTC	1 cut(s)	247
MseI	TTAA	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	7, 19, 85
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	3 cut(s)	6, 18, 84
Sau3AI	GATC	1 cut(s)	44
SetI	ASST	7 cut(s)	68, 88, 114, 132, 139, 192, 258
Sse9I	AATT	1 cut(s)	29
SspI	AATATT	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	52, 76
TasI	AATT	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	3 cut(s)	5, 17, 83
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.