Rh7AG255200

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000747
Physical Location & Seq
Reverse (-)
25808608 .. 25809398
791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG255200.1

Sequence Viewer

Length: 291 bp
ATGGTCGATAAGATTGTGACTATATCTCCTGTTGAAAATTATGTACTAAACAATGAGATGCCAGAAGTAAGAATGGTGGAAAGTGCTGTTTGTGCTGCCTCTGCTGAAAATGTTTCACCAAATGCTGAGATGGATCTCCTAACAATGGAAGGGTGTATATATGTCAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAAATTCAGCAATTGGACAAGATGCAGTGAACAAGGCTAAAGCATTTGATGGAAAGCATCAGTTGATAGCAAGTGATCTGAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

96

Amino Acids

10.43

Weight (kDa)

4.81

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AcsI RAATTY 1 cut(s) 205
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 1 cut(s) 35
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 175
AlwI GGATC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 108
BanII GRGCYC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 124, 245
BfaI CTAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmsI GCATC 3 cut(s) 48, 214, 268
BpuEI CTTGAG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 117, 272
BseXI GCAGC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 2 cut(s) 133, 277
BspCNI CTCAG 2 cut(s) 118, 273
BspPI GGATC 1 cut(s) 141
BssMI GATC 2 cut(s) 133, 277
BstDEI CTNAG 2 cut(s) 126, 281
BstKTI GATC 2 cut(s) 136, 280
BstMBI GATC 2 cut(s) 133, 277
BstMWI GCNNNNNNNGC 2 cut(s) 92, 101
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Csp6I GTAC 1 cut(s) 44
CviJI RGCY 2 cut(s) 173, 239
CviKI_1 RGCY 2 cut(s) 173, 239
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 2 cut(s) 126, 281
DpnI GATC 2 cut(s) 135, 279
DpnII GATC 2 cut(s) 133, 277
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 175
FaiI YATR 6 cut(s) 23, 42, 158, 160, 162, 194
Fnu4HI GCNGC 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 96
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 200, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 101
HpyF3I CTNAG 2 cut(s) 126, 281
Kzo9I GATC 2 cut(s) 133, 277
LpnPI CCDG 2 cut(s) 42, 75
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 3 cut(s) 48, 214, 268
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 135, 279
MboI GATC 2 cut(s) 133, 277
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 3 cut(s) 37, 205, 213
MnlI CCTC 1 cut(s) 109
MunI CAATTG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 92, 101
NdeII GATC 2 cut(s) 133, 277
NmuCI GTSAC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SacI GAGCTC 1 cut(s) 175
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 133, 277
SduI GDGCHC 1 cut(s) 175
SetI ASST 1 cut(s) 175
SfaNI GCATC 3 cut(s) 48, 214, 268
SgeI CNNG 7 cut(s) 41, 74, 188, 201, 233, 247, 285
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 3 cut(s) 37, 205, 213
SspMI CTAG 1 cut(s) 189
SstI GAGCTC 1 cut(s) 175
TaqI TCGA 1 cut(s) 6
TasI AATT 3 cut(s) 37, 205, 213
TatI WGTACW 1 cut(s) 43
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 16
TspRI CASTG 1 cut(s) 234
XapI RAATTY 1 cut(s) 205
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.