RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF6469 | PF20073 | 76 - 204 | 1.1e-61 | Domain of unknown function (DUF6469) |
| AAA_11 | PF13086 | 247 - 456 | 3.1e-17 | AAA domain |
| AAA_19 | PF13245 | 267 - 615 | 1.2e-07 | AAA domain |
| AAA_11 | PF13086 | 526 - 620 | 9.4e-19 | AAA domain |
| AAA_12 | PF13087 | 628 - 824 | 4.3e-56 | AAA domain |
| UvrD-helicase | PF00580 | 1332 - 1421 | 2.8e-07 | UvrD/REP helicase N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1995, 2084, 2357 |
| AarI | CACCTGC | 1 cut(s) | 4600 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1073 |
| AatII | GACGTC | 1 cut(s) | 7234 |
| Acc16I | TGCGCA | 1 cut(s) | 5578 |
| Acc36I | ACCTGC | 2 cut(s) | 4600, 5783 |
| AccB1I | GGYRCC | 2 cut(s) | 223, 3369 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1109, 1402, 2760 |
| AccBSI | CCGCTC | 1 cut(s) | 5354 |
| AccI | GTMKAC | 3 cut(s) | 1386, 6207, 7641 |
| AccII | CGCG | 2 cut(s) | 4825, 7278 |
| AciI | CCGC | 7 cut(s) | 2944, 3310, 3540, 5354, 5375, 5656, 5733 |
| AclI | AACGTT | 1 cut(s) | 5949 |
| AclWI | GGATC | 7 cut(s) | 96, 1996, 2367, 3246, 5209, 6854, 7417 |
| AcoI | YGGCCR | 4 cut(s) | 3748, 5097, 6681, 7650 |
| AcyI | GRCGYC | 2 cut(s) | 6090, 7231 |
| AdeI | CACNNNGTG | 1 cut(s) | 5106 |
| AflIII | ACRYGT | 2 cut(s) | 3508, 4206 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3477, 6823 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 3366, 3398, 3609, 3641, 4307, 4339 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1175, 1207, 5179, 5211 |
| Alw21I | GWGCWC | 6 cut(s) | 910, 1258, 4639, 4868, 6076, 6894 |
| AlwI | GGATC | 7 cut(s) | 96, 1996, 2367, 3246, 5209, 6854, 7417 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 2179, 3320, 3440, 3743, 5264, 6667 |
| Ama87I | CYCGRG | 3 cut(s) | 183, 5058, 6863 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3023, 3055, 5906, 5938 |
| AseI | ATTAAT | 3 cut(s) | 2985, 5484, 5612 |
| Asp700I | GAANNNNTTC | 9 cut(s) | 77, 126, 674, 2479, 2690, 4383, 5633, 6941, 7248 |
| AspLEI | GCGC | 5 cut(s) | 3459, 4827, 5579, 5969, 7113 |
| AsuC2I | CCSGG | 7 cut(s) | 351, 831, 1643, 3061, 3956, 3986, 6685 |
| AvaI | CYCGRG | 3 cut(s) | 183, 5058, 6863 |
| AvaII | GGWCC | 7 cut(s) | 63, 824, 2069, 2512, 5512, 6364, 6971 |
| BaeGI | GKGCMC | 1 cut(s) | 226 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 4439, 4472, 6271, 6304 |
| BalI | TGGCCA | 2 cut(s) | 3750, 5099 |
| BanI | GGYRCC | 2 cut(s) | 223, 3369 |
| BanII | GRGCYC | 2 cut(s) | 6580, 6894 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4083, 4115 |
| BauI | CACGAG | 2 cut(s) | 4370, 7408 |
| BbsI | GAAGAC | 3 cut(s) | 2562, 4944, 7251 |
| Bbv12I | GWGCWC | 6 cut(s) | 910, 1258, 4639, 4868, 6076, 6894 |
| BceAI | ACGGC | 3 cut(s) | 791, 1312, 7665 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1674, 1708 |
| BclI | TGATCA | 1 cut(s) | 6855 |
| BcnI | CCSGG | 7 cut(s) | 351, 831, 1643, 3061, 3956, 3986, 6685 |
| BfaI | CTAG | 9 cut(s) | 1689, 2442, 2652, 3411, 5000, 5310, 5372, 5526, 6177 |
| BfmI | CTRYAG | 7 cut(s) | 878, 2171, 3394, 3432, 5394, 6255, 6659 |
| BfoI | RGCGCY | 1 cut(s) | 7114 |
| BfuAI | ACCTGC | 2 cut(s) | 4600, 5783 |
| BglII | AGATCT | 3 cut(s) | 2898, 4171, 6145 |
| BlpI | GCTNAGC | 1 cut(s) | 138 |
| Bme18I | GGWCC | 7 cut(s) | 63, 824, 2069, 2512, 5512, 6364, 6971 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3477, 6823 |
| BmeT110I | CYCGRG | 3 cut(s) | 183, 5058, 6863 |
| BmrI | ACTGGG | 3 cut(s) | 765, 3330, 5143 |
| BmuI | ACTGGG | 3 cut(s) | 765, 3330, 5143 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2708 |
| BpiI | GAAGAC | 3 cut(s) | 2562, 4944, 7251 |
| BpmI | CTGGAG | 7 cut(s) | 89, 2939, 3041, 4506, 6258, 7078, 7544 |
| Bpu10I | CCTNAGC | 3 cut(s) | 3483, 3919, 5520 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 138 |
| BpuEI | CTTGAG | 7 cut(s) | 1169, 1242, 1434, 2229, 4097, 4727, 7122 |
| BpuMI | CCSGG | 7 cut(s) | 351, 831, 1643, 3061, 3956, 3986, 6685 |
| Bsa29I | ATCGAT | 1 cut(s) | 5213 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3015, 6441 |
| BsaHI | GRCGYC | 2 cut(s) | 6090, 7231 |
| BsaI | GGTCTC | 2 cut(s) | 2758, 6433 |
| BsaWI | WCCGGW | 1 cut(s) | 1416 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 6135, 6165 |
| Bse3DI | GCAATG | 5 cut(s) | 1120, 1722, 2067, 5028, 6858 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3015, 6441 |
| BseCI | ATCGAT | 1 cut(s) | 5213 |
| BseJI | GATNNNNATC | 2 cut(s) | 3015, 6441 |
| BseMI | GCAATG | 5 cut(s) | 1120, 1722, 2067, 5028, 6858 |
| BseMII | CTCAG | 9 cut(s) | 129, 462, 2227, 2964, 3104, 3964, 5961, 6476, 6879 |
| BseSI | GKGCMC | 1 cut(s) | 226 |
| BseX3I | CGGCCG | 1 cut(s) | 6681 |
| BseYI | CCCAGC | 2 cut(s) | 5745, 7435 |
| BsgI | GTGCAG | 3 cut(s) | 1737, 4623, 6592 |
| Bsh1236I | CGCG | 2 cut(s) | 4825, 7278 |
| Bsh1285I | CGRYCG | 1 cut(s) | 6684 |
| BshNI | GGYRCC | 2 cut(s) | 223, 3369 |
| BshVI | ATCGAT | 1 cut(s) | 5213 |
| BsiEI | CGRYCG | 1 cut(s) | 6684 |
| BsiHKAI | GWGCWC | 6 cut(s) | 910, 1258, 4639, 4868, 6076, 6894 |
| BsiHKCI | CYCGRG | 3 cut(s) | 183, 5058, 6863 |
| BsiSI | CCGG | 9 cut(s) | 351, 830, 1417, 1642, 3061, 3955, 3985, 5157, 6684 |
| BslFI | GGGAC | 5 cut(s) | 49, 1030, 2918, 5672, 6350 |
| BsmBI | CGTCTC | 1 cut(s) | 2767 |
| BsmFI | GGGAC | 5 cut(s) | 49, 1030, 2918, 5672, 6350 |
| BsmI | GAATGC | 6 cut(s) | 196, 787, 1247, 1956, 2509, 6157 |
| Bso31I | GGTCTC | 2 cut(s) | 2758, 6433 |
| BsoBI | CYCGRG | 3 cut(s) | 183, 5058, 6863 |
| Bsp1286I | GDGCHC | 8 cut(s) | 226, 910, 1258, 4639, 4868, 6076, 6580, 6894 |
| Bsp1407I | TGTACA | 3 cut(s) | 2181, 2841, 4728 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 138 |
| Bsp19I | CCATGG | 2 cut(s) | 6932, 7215 |
| Bsp68I | TCGCGA | 1 cut(s) | 7278 |
| BspACI | CCGC | 7 cut(s) | 2944, 3310, 3540, 5354, 5375, 5656, 5733 |
| BspCNI | CTCAG | 9 cut(s) | 130, 461, 2226, 2965, 3103, 3963, 5962, 6475, 6880 |
| BspDI | ATCGAT | 1 cut(s) | 5213 |
| BspFNI | CGCG | 2 cut(s) | 4825, 7278 |
| BspHI | TCATGA | 2 cut(s) | 4560, 5077 |
| BspMAI | CTGCAG | 3 cut(s) | 2175, 3436, 5398 |
| BspMI | ACCTGC | 2 cut(s) | 4600, 5783 |
| BspPI | GGATC | 7 cut(s) | 96, 1996, 2367, 3246, 5209, 6854, 7417 |
| BspQI | GCTCTTC | 1 cut(s) | 2809 |
| BspT107I | GGYRCC | 2 cut(s) | 223, 3369 |
| BspTNI | GGTCTC | 2 cut(s) | 2758, 6433 |
| BsrBI | CCGCTC | 1 cut(s) | 5354 |
| BsrDI | GCAATG | 5 cut(s) | 1120, 1722, 2067, 5028, 6858 |
| BsrGI | TGTACA | 3 cut(s) | 2181, 2841, 4728 |
| BssNI | GRCGYC | 2 cut(s) | 6090, 7231 |
| BssSI | CACGAG | 2 cut(s) | 4370, 7408 |
| Bst2BI | CACGAG | 2 cut(s) | 4370, 7408 |
| Bst6I | CTCTTC | 8 cut(s) | 501, 1243, 2095, 2809, 3258, 4218, 5196, 5663 |
| BstACI | GRCGYC | 2 cut(s) | 6090, 7231 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 230, 5264 |
| BstAUI | TGTACA | 3 cut(s) | 2181, 2841, 4728 |
| BstDSI | CCRYGG | 3 cut(s) | 6932, 7215, 7466 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 5786 |
| BstFNI | CGCG | 2 cut(s) | 4825, 7278 |
| BstH2I | RGCGCY | 1 cut(s) | 7114 |
| BstHHI | GCGC | 5 cut(s) | 3459, 4827, 5579, 5969, 7113 |
| BstMCI | CGRYCG | 1 cut(s) | 6684 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 230, 767, 1319, 1880, 3932, 4993, 5264, 5741 |
| BstNSI | RCATGY | 7 cut(s) | 1811, 3512, 3537, 3939, 4210, 4673, 5504 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2708 |
| BstSFI | CTRYAG | 7 cut(s) | 878, 2171, 3394, 3432, 5394, 6255, 6659 |
| BstSLI | GKGCMC | 1 cut(s) | 226 |
| BstUI | CGCG | 2 cut(s) | 4825, 7278 |
| BstV2I | GAAGAC | 3 cut(s) | 2562, 4944, 7251 |
| BstX2I | RGATCY | 5 cut(s) | 88, 2898, 3238, 4171, 6145 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3036, 5049 |
| BstYI | RGATCY | 5 cut(s) | 88, 2898, 3238, 4171, 6145 |
| BstZI | CGGCCG | 1 cut(s) | 6681 |
| Bsu15I | ATCGAT | 1 cut(s) | 5213 |
| BsuTUI | ATCGAT | 1 cut(s) | 5213 |
| BtgI | CCRYGG | 3 cut(s) | 6932, 7215, 7466 |
| BtgZI | GCGATG | 1 cut(s) | 5725 |
| BtsI | GCAGTG | 3 cut(s) | 768, 1680, 5813 |
| BtuMI | TCGCGA | 1 cut(s) | 7278 |
| BveI | ACCTGC | 2 cut(s) | 4600, 5783 |
| CaiI | CAGNNNCTG | 6 cut(s) | 2179, 3320, 3440, 3743, 5264, 6667 |
| CciI | TCATGA | 2 cut(s) | 4560, 5077 |
| CfoI | GCGC | 5 cut(s) | 3459, 4827, 5579, 5969, 7113 |
| ClaI | ATCGAT | 1 cut(s) | 5213 |
| CseI | GACGC | 1 cut(s) | 6098 |
| CsiI | ACCWGGT | 1 cut(s) | 7084 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 5010, 5045, 7344, 7379 |
| DraI | TTTAAA | 7 cut(s) | 490, 1935, 2644, 2827, 4201, 4488, 7533 |
| DraIII | CACNNNGTG | 1 cut(s) | 5106 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1073 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3477, 6823 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1073 |
| EaeI | YGGCCR | 4 cut(s) | 3748, 5097, 6681, 7650 |
| EagI | CGGCCG | 1 cut(s) | 6681 |
| Eam1104I | CTCTTC | 8 cut(s) | 501, 1243, 2095, 2809, 3258, 4218, 5196, 5663 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3477, 6823 |
| EarI | CTCTTC | 8 cut(s) | 501, 1243, 2095, 2809, 3258, 4218, 5196, 5663 |
| EciI | GGCGGA | 1 cut(s) | 3555 |
| Ecl136II | GAGCTC | 1 cut(s) | 6892 |
| EclXI | CGGCCG | 1 cut(s) | 6681 |
| Eco147I | AGGCCT | 4 cut(s) | 2838, 4368, 5810, 6941 |
| Eco24I | GRGCYC | 2 cut(s) | 6580, 6894 |
| Eco31I | GGTCTC | 2 cut(s) | 2758, 6433 |
| Eco32I | GATATC | 2 cut(s) | 2926, 3613 |
| Eco47I | GGWCC | 7 cut(s) | 63, 824, 2069, 2512, 5512, 6364, 6971 |
| Eco52I | CGGCCG | 1 cut(s) | 6681 |
| Eco53kI | GAGCTC | 1 cut(s) | 6892 |
| Eco88I | CYCGRG | 3 cut(s) | 183, 5058, 6863 |
| EcoICRI | GAGCTC | 1 cut(s) | 6892 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 5786 |
| EcoO109I | RGGNCCY | 2 cut(s) | 824, 4702 |
| EcoRI | GAATTC | 4 cut(s) | 2396, 3139, 6547, 6724 |
| EcoRV | GATATC | 2 cut(s) | 2926, 3613 |
| EcoT22I | ATGCAT | 2 cut(s) | 1956, 3937 |
| EcoT38I | GRGCYC | 2 cut(s) | 6580, 6894 |
| Esp3I | CGTCTC | 1 cut(s) | 2767 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 7236, 7268 |
| FaqI | GGGAC | 5 cut(s) | 49, 1030, 2918, 5672, 6350 |
| FauI | CCCGC | 2 cut(s) | 5368, 5649 |
| FauNDI | CATATG | 2 cut(s) | 265, 597 |
| FbaI | TGATCA | 1 cut(s) | 6855 |
| FblI | GTMKAC | 3 cut(s) | 1386, 6207, 7641 |
| FriOI | GRGCYC | 2 cut(s) | 6580, 6894 |
| FspBI | CTAG | 9 cut(s) | 1689, 2442, 2652, 3411, 5000, 5310, 5372, 5526, 6177 |
| FspI | TGCGCA | 1 cut(s) | 5578 |
| GlaI | GCGC | 5 cut(s) | 3458, 4826, 5578, 5968, 7112 |
| GsaI | CCCAGC | 2 cut(s) | 5749, 7439 |
| GsuI | CTGGAG | 7 cut(s) | 89, 2939, 3041, 4506, 6258, 7078, 7544 |
| HaeII | RGCGCY | 1 cut(s) | 7114 |
| HapII | CCGG | 9 cut(s) | 351, 830, 1417, 1642, 3061, 3955, 3985, 5157, 6684 |
| HgaI | GACGC | 1 cut(s) | 6098 |
| HhaI | GCGC | 5 cut(s) | 3459, 4827, 5579, 5969, 7113 |
| Hin1I | GRCGYC | 2 cut(s) | 6090, 7231 |
| Hin6I | GCGC | 5 cut(s) | 3457, 4825, 5577, 5967, 7111 |
| HinP1I | GCGC | 5 cut(s) | 3457, 4825, 5577, 5967, 7111 |
| HincII | GTYRAC | 3 cut(s) | 1604, 4392, 7642 |
| HindII | GTYRAC | 3 cut(s) | 1604, 4392, 7642 |
| HindIII | AAGCTT | 7 cut(s) | 1888, 2747, 3866, 5151, 5631, 6515, 6914 |
| HpaII | CCGG | 9 cut(s) | 351, 830, 1417, 1642, 3061, 3955, 3985, 5157, 6684 |
| Hpy99I | CGWCG | 4 cut(s) | 2535, 4110, 4644, 6562 |
| HpyCH4IV | ACGT | 6 cut(s) | 2883, 3873, 5949, 6560, 7210, 7231 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 230, 767, 1319, 1880, 3932, 4993, 5264, 5741 |
| HpySE526I | ACGT | 6 cut(s) | 2883, 3873, 5949, 6560, 7210, 7231 |
| Hsp92I | GRCGYC | 2 cut(s) | 6090, 7231 |
| HspAI | GCGC | 5 cut(s) | 3457, 4825, 5577, 5967, 7111 |
| Ksp22I | TGATCA | 1 cut(s) | 6855 |
| LguI | GCTCTTC | 1 cut(s) | 2809 |
| MabI | ACCWGGT | 1 cut(s) | 7084 |
| MaeI | CTAG | 9 cut(s) | 1689, 2442, 2652, 3411, 5000, 5310, 5372, 5526, 6177 |
| MaeII | ACGT | 6 cut(s) | 2883, 3873, 5949, 6560, 7210, 7231 |
| MbiI | CCGCTC | 1 cut(s) | 5354 |
| MflI | RGATCY | 5 cut(s) | 88, 2898, 3238, 4171, 6145 |
| MhlI | GDGCHC | 8 cut(s) | 226, 910, 1258, 4639, 4868, 6076, 6580, 6894 |
| MlsI | TGGCCA | 2 cut(s) | 3750, 5099 |
| MluNI | TGGCCA | 2 cut(s) | 3750, 5099 |
| MmeI | TCCRAC | 9 cut(s) | 935, 1094, 1455, 2111, 2400, 2741, 5955, 7095, 7350 |
| Mox20I | TGGCCA | 2 cut(s) | 3750, 5099 |
| Mph1103I | ATGCAT | 2 cut(s) | 1956, 3937 |
| MroXI | GAANNNNTTC | 9 cut(s) | 77, 126, 674, 2479, 2690, 4383, 5633, 6941, 7248 |
| MscI | TGGCCA | 2 cut(s) | 3750, 5099 |
| MslI | CAYNNNNRTG | 4 cut(s) | 792, 1346, 1497, 5088 |
| Msp20I | TGGCCA | 2 cut(s) | 3750, 5099 |
| MspI | CCGG | 9 cut(s) | 351, 830, 1417, 1642, 3061, 3955, 3985, 5157, 6684 |
| MssI | GTTTAAAC | 1 cut(s) | 4201 |
| Mva1269I | GAATGC | 6 cut(s) | 196, 787, 1247, 1956, 2509, 6157 |
| MvnI | CGCG | 2 cut(s) | 4825, 7278 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 230, 767, 1319, 1880, 3932, 4993, 5264, 5741 |
| NciI | CCSGG | 7 cut(s) | 351, 831, 1643, 3061, 3956, 3986, 6685 |
| NcoI | CCATGG | 2 cut(s) | 6932, 7215 |
| NdeI | CATATG | 2 cut(s) | 265, 597 |
| NmuCI | GTSAC | 8 cut(s) | 3039, 3107, 3469, 3733, 5123, 7219, 7450, 7697 |
| NruI | TCGCGA | 1 cut(s) | 7278 |
| NsbI | TGCGCA | 1 cut(s) | 5578 |
| NsiI | ATGCAT | 2 cut(s) | 1956, 3937 |
| NspI | RCATGY | 7 cut(s) | 1811, 3512, 3537, 3939, 4210, 4673, 5504 |
| PaeI | GCATGC | 3 cut(s) | 1811, 4673, 5504 |
| PagI | TCATGA | 2 cut(s) | 4560, 5077 |
| PaqCI | CACCTGC | 1 cut(s) | 4600 |
| PceI | AGGCCT | 4 cut(s) | 2838, 4368, 5810, 6941 |
| PciI | ACATGT | 2 cut(s) | 3508, 4206 |
| PciSI | GCTCTTC | 1 cut(s) | 2809 |
| PctI | GAATGC | 6 cut(s) | 196, 787, 1247, 1956, 2509, 6157 |
| PdmI | GAANNNNTTC | 9 cut(s) | 77, 126, 674, 2479, 2690, 4383, 5633, 6941, 7248 |
| PflFI | GACNNNGTC | 1 cut(s) | 2127 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1109, 1402, 2760 |
| PfoI | TCCNGGA | 3 cut(s) | 1641, 2004, 2053 |
| PmeI | GTTTAAAC | 1 cut(s) | 4201 |
| PpuMI | RGGWCCY | 1 cut(s) | 824 |
| PscI | ACATGT | 2 cut(s) | 3508, 4206 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2708 |
| PshBI | ATTAAT | 3 cut(s) | 2985, 5484, 5612 |
| PsiI | TTATAA | 3 cut(s) | 1995, 2084, 2357 |
| Psp124BI | GAGCTC | 1 cut(s) | 6894 |
| Psp1406I | AACGTT | 1 cut(s) | 5949 |
| Psp5II | RGGWCCY | 1 cut(s) | 824 |
| PspFI | CCCAGC | 2 cut(s) | 5745, 7435 |
| PspPPI | RGGWCCY | 1 cut(s) | 824 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2864, 2896, 4785, 4817 |
| PstI | CTGCAG | 3 cut(s) | 2175, 3436, 5398 |
| PstNI | CAGNNNCTG | 6 cut(s) | 2179, 3320, 3440, 3743, 5264, 6667 |
| PsuI | RGATCY | 5 cut(s) | 88, 2898, 3238, 4171, 6145 |
| PsyI | GACNNNGTC | 1 cut(s) | 2127 |
| RruI | TCGCGA | 1 cut(s) | 7278 |
| RseI | CAYNNNNRTG | 4 cut(s) | 792, 1346, 1497, 5088 |
| SacI | GAGCTC | 1 cut(s) | 6894 |
| SalI | GTCGAC | 1 cut(s) | 7640 |
| SapI | GCTCTTC | 1 cut(s) | 2809 |
| SduI | GDGCHC | 8 cut(s) | 226, 910, 1258, 4639, 4868, 6076, 6580, 6894 |
| SexAI | ACCWGGT | 1 cut(s) | 7084 |
| SfcI | CTRYAG | 7 cut(s) | 878, 2171, 3394, 3432, 5394, 6255, 6659 |
| SinI | GGWCC | 7 cut(s) | 63, 824, 2069, 2512, 5512, 6364, 6971 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 792, 1346, 1497, 5088 |
| SmlI | CTYRAG | 7 cut(s) | 1148, 1257, 1449, 2244, 4112, 4706, 7137 |
| SmoI | CTYRAG | 7 cut(s) | 1148, 1257, 1449, 2244, 4112, 4706, 7137 |
| SphI | GCATGC | 3 cut(s) | 1811, 4673, 5504 |
| SseBI | AGGCCT | 4 cut(s) | 2838, 4368, 5810, 6941 |
| SsiI | CCGC | 7 cut(s) | 2944, 3310, 3540, 5354, 5375, 5656, 5733 |
| SspI | AATATT | 4 cut(s) | 1621, 1674, 5238, 5649 |
| SspMI | CTAG | 9 cut(s) | 1689, 2442, 2652, 3411, 5000, 5310, 5372, 5526, 6177 |
| SstI | GAGCTC | 1 cut(s) | 6894 |
| StuI | AGGCCT | 4 cut(s) | 2838, 4368, 5810, 6941 |
| TaiI | ACGT | 6 cut(s) | 2886, 3876, 5952, 6563, 7213, 7234 |
| TatI | WGTACW | 5 cut(s) | 2181, 2841, 2969, 4728, 7617 |
| TauI | GCSGC | 2 cut(s) | 5357, 5735 |
| TseFI | GTSAC | 8 cut(s) | 3039, 3107, 3469, 3733, 5123, 7219, 7450, 7697 |
| Tsp45I | GTSAC | 8 cut(s) | 3039, 3107, 3469, 3733, 5123, 7219, 7450, 7697 |
| TspGWI | ACGGA | 1 cut(s) | 4394 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2127 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1109, 1402, 2760 |
| VpaK11BI | GGWCC | 7 cut(s) | 63, 824, 2069, 2512, 5512, 6364, 6971 |
| VspI | ATTAAT | 3 cut(s) | 2985, 5484, 5612 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 5786 |
| XbaI | TCTAGA | 1 cut(s) | 6176 |
| XceI | RCATGY | 7 cut(s) | 1811, 3512, 3537, 3939, 4210, 4673, 5504 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1110, 2578 |
| XmiI | GTMKAC | 3 cut(s) | 1386, 6207, 7641 |
| XmnI | GAANNNNTTC | 9 cut(s) | 77, 126, 674, 2479, 2690, 4383, 5633, 6941, 7248 |
| XspI | CTAG | 9 cut(s) | 1689, 2442, 2652, 3411, 5000, 5310, 5372, 5526, 6177 |
| ZraI | GACGTC | 1 cut(s) | 7232 |
| Zsp2I | ATGCAT | 2 cut(s) | 1956, 3937 |