Rroxscaffold_6G00389360

RNA recognition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000747
Physical Location & Seq
Forward (+)
2886037 .. 2888873
2837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389360.1

Sequence Viewer

Length: 546 bp
ATGGGTCCTGCCCCATCTCCTCCACCCATCGTCGTCGATTCTACCACCGCCCAAATGAAATCCGAGAGCTTCCGGCCCGGACACGATAAAACAATGGCAGCAATATTTGCAGTAGAGAGAAAATTAAATGATACCGGATCAGCTGTCAAAACAAGCAGGTATGTGATTGCGGGAGCAGCTTGGTTCGATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGCAGGCTGCAGGTACGAAAACCAGAGAAAAGTTCCATATCGCTAGGCCTGTGGAGTAAAGGAACTAGAGCGGAGGAGAAAATGAAATCTGATATGCCTCTTGATTATGCGGTTTTCCAGTTGTCACCCAAGCATTCAAGGTTATTTGAGCTGCCAATTGGCTATGACTTTGACTATGTTGAATACCACAGAAATGAGATAGATCTGCCAAGGTGCCTCGGAATGATTGTTTGTGTGCGGAGTTTTACATTTTCAGTCATGATACAGATAAATGAAGGGGATCGTGCATTTTACCGGCCAAAGATAGATATCGGTGTATCGATGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

181

Amino Acids

20.24

Weight (kDa)

9.23

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 147, 217
AccB1I GGYRCC 1 cut(s) 429
AccBSI CCGCTC 1 cut(s) 287
AciI CCGC 5 cut(s) 48, 170, 287, 326, 454
AclWI GGATC 2 cut(s) 145, 504
AcoI YGGCCR 1 cut(s) 512
AfaI GTAC 1 cut(s) 231
AgsI TTSAA 2 cut(s) 354, 398
AluBI AGCT 4 cut(s) 69, 143, 179, 367
AluI AGCT 4 cut(s) 69, 143, 179, 367
AlwI GGATC 2 cut(s) 145, 504
AoxI GGCC 3 cut(s) 74, 262, 512
ApeKI GCWGC 4 cut(s) 98, 176, 223, 367
AspS9I GGNCC 2 cut(s) 5, 75
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 333
AvaII GGWCC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 429
BbvI GCAGC 4 cut(s) 110, 188, 210, 354
BccI CCATC 3 cut(s) 22, 35, 182
BcnI CCSGG 1 cut(s) 78
BfaI CTAG 2 cut(s) 260, 282
BfmI CTRYAG 1 cut(s) 224
BfuAI ACCTGC 2 cut(s) 147, 217
BglII AGATCT 1 cut(s) 418
BisI GCNGC 4 cut(s) 99, 177, 224, 368
BlsI GCNGC 4 cut(s) 100, 178, 225, 369
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 2 cut(s) 5, 75
BmiI GGNNCC 2 cut(s) 6, 431
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 536
BsaBI GATNNNNATC 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 425, 433
BsaWI WCCGGW 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 510
Bse1I ACTGG 1 cut(s) 334
Bse8I GATNNNNATC 1 cut(s) 524
BseCI ATCGAT 1 cut(s) 536
BseDI CCNNGG 2 cut(s) 425, 433
BseJI GATNNNNATC 1 cut(s) 524
BseNI ACTGG 1 cut(s) 334
BseRI GAGGAG 2 cut(s) 9, 305
BseXI GCAGC 4 cut(s) 110, 188, 210, 354
BshFI GGCC 3 cut(s) 76, 264, 514
BshNI GGYRCC 1 cut(s) 429
BshVI ATCGAT 1 cut(s) 536
BsiSI CCGG 4 cut(s) 73, 78, 135, 511
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 3 cut(s) 76, 264, 514
Bsp143I GATC 3 cut(s) 137, 418, 496
BspACI CCGC 5 cut(s) 48, 170, 287, 326, 454
BspANI GGCC 3 cut(s) 76, 264, 514
BspDI ATCGAT 1 cut(s) 536
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 2 cut(s) 6, 431
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 2 cut(s) 147, 217
BspPI GGATC 2 cut(s) 145, 504
BspT107I GGYRCC 1 cut(s) 429
BsrBI CCGCTC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 510
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 1 cut(s) 510
BssECI CCNNGG 2 cut(s) 425, 433
BssMI GATC 3 cut(s) 137, 418, 496
BssT1I CCWWGG 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 217, 221
BstKTI GATC 3 cut(s) 140, 421, 499
BstMBI GATC 3 cut(s) 137, 418, 496
BstMWI GCNNNNNNNGC 2 cut(s) 107, 176
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 110, 188, 210, 354
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 536
BsuRI GGCC 3 cut(s) 76, 264, 514
BsuTUI ATCGAT 1 cut(s) 536
BveI ACCTGC 2 cut(s) 147, 217
Cac8I GCNNGC 2 cut(s) 217, 221
CciI TCATGA 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 510
Cfr13I GGNCC 2 cut(s) 5, 75
ClaI ATCGAT 1 cut(s) 536
Csp6I GTAC 1 cut(s) 230
CviAII CATG 1 cut(s) 475
CviJI RGCY 9 cut(s) 69, 76, 143, 179, 223, 264, 367, 378, 514
CviKI_1 RGCY 9 cut(s) 69, 76, 143, 179, 223, 264, 367, 378, 514
CviQI GTAC 1 cut(s) 230
DpnI GATC 3 cut(s) 139, 420, 498
DpnII GATC 3 cut(s) 137, 418, 496
EaeI YGGCCR 1 cut(s) 512
Eco130I CCWWGG 1 cut(s) 425
Eco147I AGGCCT 1 cut(s) 264
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 5
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 425
EcoT22I ATGCAT 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 1 cut(s) 478
FaiI YATR 7 cut(s) 162, 254, 311, 324, 381, 393, 476
FatI CATG 1 cut(s) 474
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 4 cut(s) 99, 177, 224, 368
Fsp4HI GCNGC 4 cut(s) 99, 177, 224, 368
FspBI CTAG 2 cut(s) 260, 282
GluI GCNGC 4 cut(s) 99, 177, 224, 368
HaeIII GGCC 3 cut(s) 76, 264, 514
HapII CCGG 4 cut(s) 73, 78, 135, 511
Hin1II CATG 1 cut(s) 478
HinfI GANTC 1 cut(s) 38
HpaII CCGG 4 cut(s) 73, 78, 135, 511
HphI GGTGA 1 cut(s) 333
Hpy188I TCNGA 3 cut(s) 64, 307, 437
Hpy188III TCNNGA 2 cut(s) 317, 475
Hpy99I CGWCG 2 cut(s) 35, 38
HpyAV CCTTC 1 cut(s) 485
HpyCH4V TGCA 4 cut(s) 110, 226, 503, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 176
Hsp92II CATG 1 cut(s) 478
Kzo9I GATC 3 cut(s) 137, 418, 496
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 4 cut(s) 110, 188, 210, 354
LweI GCATC 1 cut(s) 528
MaeI CTAG 2 cut(s) 260, 282
MaeIII GTNAC 1 cut(s) 339
MalI GATC 3 cut(s) 139, 420, 498
MbiI CCGCTC 1 cut(s) 287
MboI GATC 3 cut(s) 137, 418, 496
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 418
MluCI AATT 2 cut(s) 122, 372
MnlI CCTC 4 cut(s) 30, 283, 324, 443
Mph1103I ATGCAT 1 cut(s) 543
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 4 cut(s) 73, 78, 135, 511
MspR9I CCNGG 1 cut(s) 78
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 349
MwoI GCNNNNNNNGC 2 cut(s) 107, 176
NciI CCSGG 1 cut(s) 78
NdeII GATC 3 cut(s) 137, 418, 496
NlaIII CATG 1 cut(s) 478
NlaIV GGNNCC 2 cut(s) 6, 431
NmuCI GTSAC 1 cut(s) 339
NsiI ATGCAT 1 cut(s) 543
PagI TCATGA 1 cut(s) 474
PceI AGGCCT 1 cut(s) 264
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 4 cut(s) 100, 178, 225, 369
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 6, 431
PspPI GGNCC 2 cut(s) 5, 75
PspPPI RGGWCCY 1 cut(s) 5
PstI CTGCAG 1 cut(s) 228
PsuI RGATCY 1 cut(s) 418
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 4 cut(s) 99, 177, 224, 368
Sau3AI GATC 3 cut(s) 137, 418, 496
Sau96I GGNCC 2 cut(s) 5, 75
ScrFI CCNGG 1 cut(s) 78
SetI ASST 9 cut(s) 71, 145, 161, 181, 207, 231, 359, 369, 431
SfaNI GCATC 1 cut(s) 528
SfcI CTRYAG 1 cut(s) 224
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 2 cut(s) 122, 372
SseBI AGGCCT 1 cut(s) 264
SsiI CCGC 5 cut(s) 48, 170, 287, 326, 454
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 260, 282
StuI AGGCCT 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 425
TaqI TCGA 3 cut(s) 36, 186, 536
TasI AATT 2 cut(s) 122, 372
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 4 cut(s) 98, 176, 223, 367
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 3 cut(s) 71, 314, 504
VpaK11BI GGWCC 1 cut(s) 5
XspI CTAG 2 cut(s) 260, 282
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.