Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Forward (+)

28838748 .. 28845881

Gene Structure 7134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G012940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAAAAAGCAAAATTACAAGTTGCATTTCTTTTCATTTGTACATGAACTGTGTTCAGGTTTCATGCACTCTGAACCAGGTTATCAATATGATTCTACGCAATCAAAGATTGCATTTGTTATGTTCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGATTGTGACTATATCTCCTGTTGAAAATTATGTACCAATTAATGAGATGCCGCAATTGGTGGAAAGTGCTGTTTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGTTGAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTGTGTAAATAGAGCTCAAGATGTAATGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAGAGAAATTGCTAGTAGGCCTTTCAGTGGTTAACAAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAGATGATACTGGATCAACTGTCAAAACAAGCAGGTATGGGACTGTGGGAGCAGCTTGGTTCAACGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGTTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGTTGTGTCAAACTTGACTGCAAAGGTAGTAAACCCAATTGCTTTTATATTTGTTCTCAAGCATTTGTTCTTCAAGCATTTTCATATCAAAGAGCCTTATTCTGGATGTATTAAAGCTTTAAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

281

Amino Acids

30.95

Weight (kDa)

9.47

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	606, 670, 677
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	3 cut(s)	42, 198, 691
AfiI	CCNNNNNNNGG	3 cut(s)	299, 496, 818
AgsI	TTSAA	5 cut(s)	127, 146, 188, 646, 790
AhdI	GACNNNNNGTC	1 cut(s)	536
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	4 cut(s)	140, 323, 638, 833
AluI	AGCT	4 cut(s)	140, 323, 638, 833
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	1 cut(s)	604
AoxI	GGCC	1 cut(s)	487
ApeKI	GCWGC	4 cut(s)	242, 557, 569, 635
AseI	ATTAAT	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	325, 468
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	4 cut(s)	229, 569, 581, 647
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	339, 482
BfuAI	ACCTGC	3 cut(s)	606, 670, 677
BisI	GCNGC	5 cut(s)	215, 243, 558, 570, 636
BlsI	GCNGC	5 cut(s)	216, 244, 559, 571, 637
Bme1390I	CCNGG	1 cut(s)	78
BmeRI	GACNNNNNGTC	1 cut(s)	536
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	5 cut(s)	121, 201, 364, 418, 437
BplI	GAGNNNNNCTC	2 cut(s)	450, 482
BpuEI	CTTGAG	2 cut(s)	309, 758
Bsa29I	ATCGAT	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 496, 818
Bse1I	ACTGG	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	164
BseGI	GGATG	2 cut(s)	136, 827
BseLI	CCNNNNNNNGG	3 cut(s)	299, 496, 818
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	598
BseXI	GCAGC	4 cut(s)	229, 569, 581, 647
BshFI	GGCC	1 cut(s)	489
BshVI	ATCGAT	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	3 cut(s)	299, 496, 818
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	637
BsnI	GGCC	1 cut(s)	489
Bso31I	GGTCTC	1 cut(s)	544
Bsp1286I	GDGCHC	2 cut(s)	325, 468
Bsp1407I	TGTACA	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	523, 596
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	1 cut(s)	489
BspCNI	CTCAG	1 cut(s)	424
BspDI	ATCGAT	1 cut(s)	164
BspMI	ACCTGC	3 cut(s)	606, 670, 677
BspPI	GGATC	1 cut(s)	604
BspTNI	GGTCTC	1 cut(s)	544
BsrGI	TGTACA	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	598
BssMI	GATC	2 cut(s)	523, 596
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	4 cut(s)	51, 604, 628, 650
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstAUI	TGTACA	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	136, 827
BstKTI	GATC	2 cut(s)	526, 599
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	2 cut(s)	523, 596
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 248, 566
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	4 cut(s)	229, 569, 581, 647
Bsu15I	ATCGAT	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	489
BsuTUI	ATCGAT	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	136, 827
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	3 cut(s)	606, 670, 677
ClaI	ATCGAT	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	76
Csp6I	GTAC	3 cut(s)	41, 197, 690
CviAII	CATG	2 cut(s)	44, 64
CviJI	RGCY	9 cut(s)	140, 288, 323, 389, 466, 489, 638, 811, 833
CviKI_1	RGCY	9 cut(s)	140, 288, 323, 389, 466, 489, 638, 811, 833
CviQI	GTAC	3 cut(s)	41, 197, 690
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	2 cut(s)	525, 598
DpnII	GATC	2 cut(s)	523, 596
DraI	TTTAAA	1 cut(s)	837
DriI	GACNNNNNGTC	1 cut(s)	536
Eam1105I	GACNNNNNGTC	1 cut(s)	536
Ecl136II	GAGCTC	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	489
Eco24I	GRGCYC	2 cut(s)	325, 468
Eco31I	GGTCTC	1 cut(s)	544
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	518
EcoICRI	GAGCTC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	325, 468
FaeI	CATG	2 cut(s)	47, 67
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	2 cut(s)	43, 63
FauNDI	CATATG	1 cut(s)	714
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	5 cut(s)	215, 243, 558, 570, 636
FokI	GGATG	2 cut(s)	143, 834
FriOI	GRGCYC	2 cut(s)	325, 468
Fsp4HI	GCNGC	5 cut(s)	215, 243, 558, 570, 636
FspBI	CTAG	2 cut(s)	339, 482
GluI	GCNGC	5 cut(s)	215, 243, 558, 570, 636
HaeIII	GGCC	1 cut(s)	489
Hin1II	CATG	2 cut(s)	47, 67
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	1 cut(s)	92
HpaI	GTTAAC	1 cut(s)	502
HphI	GGTGA	1 cut(s)	255
Hpy166II	GTNNAC	3 cut(s)	382, 502, 748
Hpy188I	TCNGA	2 cut(s)	73, 433
Hpy188III	TCNNGA	3 cut(s)	143, 326, 819
Hpy8I	GTNNAC	3 cut(s)	382, 502, 748
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	4 cut(s)	51, 604, 628, 650
HpyCH4V	TGCA	8 cut(s)	25, 67, 113, 350, 428, 569, 686, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 248, 566
HpyF3I	CTNAG	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	47, 67
Ksp22I	TGATCA	1 cut(s)	523
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	523, 596
LmnI	GCTCC	1 cut(s)	632
Lsp1109I	GCAGC	4 cut(s)	229, 569, 581, 647
LweI	GCATC	5 cut(s)	121, 201, 364, 418, 437
MabI	ACCWGGT	1 cut(s)	76
MaeI	CTAG	2 cut(s)	339, 482
MaeIII	GTNAC	2 cut(s)	169, 439
MalI	GATC	2 cut(s)	525, 598
MboI	GATC	2 cut(s)	523, 596
MboII	GAAGA	1 cut(s)	778
MfeI	CAATTG	3 cut(s)	218, 363, 753
MhlI	GDGCHC	2 cut(s)	325, 468
MluCI	AATT	9 cut(s)	13, 190, 201, 218, 363, 476, 581, 753, 841
MnlI	CCTC	1 cut(s)	268
MseI	TTAA	4 cut(s)	204, 501, 828, 836
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	3 cut(s)	218, 363, 753
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	239, 248, 566
NdeI	CATATG	1 cut(s)	714
NdeII	GATC	2 cut(s)	523, 596
NlaIII	CATG	2 cut(s)	47, 67
NmuCI	GTSAC	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	216, 244, 559, 571, 637
PshBI	ATTAAT	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
RsaI	GTAC	3 cut(s)	42, 198, 691
RsaNI	GTAC	3 cut(s)	41, 197, 690
SacI	GAGCTC	1 cut(s)	325
SaqAI	TTAA	4 cut(s)	204, 501, 828, 836
SatI	GCNGC	5 cut(s)	215, 243, 558, 570, 636
Sau3AI	GATC	2 cut(s)	523, 596
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	325, 468
SexAI	ACCWGGT	1 cut(s)	76
SfaNI	GCATC	5 cut(s)	121, 201, 364, 418, 437
SmlI	CTYRAG	2 cut(s)	324, 773
SmoI	CTYRAG	2 cut(s)	324, 773
Sse9I	AATT	9 cut(s)	13, 190, 201, 218, 363, 476, 581, 753, 841
SseBI	AGGCCT	1 cut(s)	489
SsiI	CCGC	1 cut(s)	215
SspI	AATATT	1 cut(s)	564
SspMI	CTAG	2 cut(s)	339, 482
SstI	GAGCTC	1 cut(s)	325
StuI	AGGCCT	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	4 cut(s)	51, 604, 628, 650
TaqI	TCGA	1 cut(s)	164
TasI	AATT	9 cut(s)	13, 190, 201, 218, 363, 476, 581, 753, 841
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	4 cut(s)	204, 501, 828, 836
Tru9I	TTAA	4 cut(s)	204, 501, 828, 836
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	4 cut(s)	242, 557, 569, 635
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	6 cut(s)	17, 24, 52, 60, 417, 788
TspRI	CASTG	1 cut(s)	501
VspI	ATTAAT	1 cut(s)	204
XspI	CTAG	2 cut(s)	339, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.