RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 271 |
| AciI | CCGC | 1 cut(s) | 271 |
| AgsI | TTSAA | 2 cut(s) | 26, 262 |
| AluBI | AGCT | 2 cut(s) | 115, 278 |
| AluI | AGCT | 2 cut(s) | 115, 278 |
| Alw26I | GTCTC | 1 cut(s) | 220 |
| ApeKI | GCWGC | 1 cut(s) | 95 |
| BbvI | GCAGC | 1 cut(s) | 107 |
| BclI | TGATCA | 1 cut(s) | 199 |
| BcoDI | GTCTC | 1 cut(s) | 220 |
| BisI | GCNGC | 1 cut(s) | 96 |
| BlsI | GCNGC | 1 cut(s) | 97 |
| BmsI | GCATC | 3 cut(s) | 40, 94, 113 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseXI | GCAGC | 1 cut(s) | 107 |
| Bsh1236I | CGCG | 1 cut(s) | 271 |
| BsmAI | GTCTC | 1 cut(s) | 220 |
| Bsp143I | GATC | 2 cut(s) | 199, 300 |
| BspACI | CCGC | 1 cut(s) | 271 |
| BspCNI | CTCAG | 1 cut(s) | 230 |
| BspFNI | CGCG | 1 cut(s) | 271 |
| BssMI | GATC | 2 cut(s) | 199, 300 |
| Bst4CI | ACNGT | 1 cut(s) | 160 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 101, 242 |
| BstC8I | GCNNGC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 1 cut(s) | 217 |
| BstFNI | CGCG | 1 cut(s) | 271 |
| BstKTI | GATC | 2 cut(s) | 202, 303 |
| BstMAI | GTCTC | 1 cut(s) | 220 |
| BstMBI | GATC | 2 cut(s) | 199, 300 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 101, 242 |
| BstNSI | RCATGY | 1 cut(s) | 299 |
| BstUI | CGCG | 1 cut(s) | 271 |
| BstV1I | GCAGC | 1 cut(s) | 107 |
| Cac8I | GCNNGC | 1 cut(s) | 144 |
| CviAII | CATG | 3 cut(s) | 130, 212, 296 |
| CviJI | RGCY | 5 cut(s) | 65, 115, 142, 208, 278 |
| CviKI_1 | RGCY | 5 cut(s) | 65, 115, 142, 208, 278 |
| DdeI | CTNAG | 1 cut(s) | 217 |
| DpnI | GATC | 2 cut(s) | 201, 302 |
| DpnII | GATC | 2 cut(s) | 199, 300 |
| FaeI | CATG | 3 cut(s) | 133, 215, 299 |
| FaiI | YATR | 5 cut(s) | 20, 131, 213, 267, 297 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 126, 158 |
| FatI | CATG | 3 cut(s) | 129, 211, 295 |
| FbaI | TGATCA | 1 cut(s) | 199 |
| Fnu4HI | GCNGC | 1 cut(s) | 96 |
| Fsp4HI | GCNGC | 1 cut(s) | 96 |
| GluI | GCNGC | 1 cut(s) | 96 |
| Hin1II | CATG | 3 cut(s) | 133, 215, 299 |
| Hpy166II | GTNNAC | 2 cut(s) | 8, 58 |
| Hpy188I | TCNGA | 3 cut(s) | 109, 204, 220 |
| Hpy8I | GTNNAC | 2 cut(s) | 8, 58 |
| HpyCH4III | ACNGT | 1 cut(s) | 160 |
| HpyCH4V | TGCA | 3 cut(s) | 104, 146, 245 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 101, 242 |
| HpyF3I | CTNAG | 1 cut(s) | 217 |
| Hsp92II | CATG | 3 cut(s) | 133, 215, 299 |
| Ksp22I | TGATCA | 1 cut(s) | 199 |
| Kzo9I | GATC | 2 cut(s) | 199, 300 |
| LpnPI | CCDG | 1 cut(s) | 277 |
| Lsp1109I | GCAGC | 1 cut(s) | 107 |
| LweI | GCATC | 3 cut(s) | 40, 94, 113 |
| MalI | GATC | 2 cut(s) | 201, 302 |
| MboI | GATC | 2 cut(s) | 199, 300 |
| MluCI | AATT | 2 cut(s) | 152, 257 |
| MnlI | CCTC | 1 cut(s) | 198 |
| MseI | TTAA | 1 cut(s) | 177 |
| MslI | CAYNNNNRTG | 2 cut(s) | 134, 170 |
| MspA1I | CMGCKG | 1 cut(s) | 278 |
| MvnI | CGCG | 1 cut(s) | 271 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 101, 242 |
| NdeII | GATC | 2 cut(s) | 199, 300 |
| NlaIII | CATG | 3 cut(s) | 133, 215, 299 |
| NspI | RCATGY | 1 cut(s) | 299 |
| PkrI | GCNGC | 1 cut(s) | 97 |
| PvuII | CAGCTG | 1 cut(s) | 278 |
| RseI | CAYNNNNRTG | 2 cut(s) | 134, 170 |
| SaqAI | TTAA | 1 cut(s) | 177 |
| SatI | GCNGC | 1 cut(s) | 96 |
| Sau3AI | GATC | 2 cut(s) | 199, 300 |
| SetI | ASST | 2 cut(s) | 117, 280 |
| SfaNI | GCATC | 3 cut(s) | 40, 94, 113 |
| SgeI | CNNG | 8 cut(s) | 59, 73, 111, 142, 155, 224, 282, 304 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 134, 170 |
| Sse9I | AATT | 2 cut(s) | 152, 257 |
| SsiI | CCGC | 1 cut(s) | 271 |
| TaaI | ACNGT | 1 cut(s) | 160 |
| TaqI | TCGA | 1 cut(s) | 35 |
| TasI | AATT | 2 cut(s) | 152, 257 |
| Tru1I | TTAA | 1 cut(s) | 177 |
| Tru9I | TTAA | 1 cut(s) | 177 |
| TseI | GCWGC | 1 cut(s) | 95 |
| TspDTI | ATGAA | 3 cut(s) | 93, 146, 200 |
| XceI | RCATGY | 1 cut(s) | 299 |