Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

1142610 .. 1147561

Gene Structure 4952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G008000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCAGCAGCTGCAGACGAGGACAGTCCAAGTAAAACAACTATCAGATCTAGCTAGTGATAGAGAAATTCACGAGTTCTTCTCATTCTCTGGAGAAATCGAACGCATTCAGATCCAACGTGAGCCTGGACAATCAAAGACTGCATTTGTTACTTTCAAGGATCCCAAAGCTCTCGAAATCGCGTTGTTGTTATCGGGAGCAACAATAGTAGATCAGATTGTGATTATATCTCCAGTTGAAAATTATGTACCAAAAACTGATGTGCTGGAAGTAAGGATGGTGGAAAGTGCTGTTTGTGCTGCTCCTGATGGAATTCTTTCACCAAATGCTGAGGTAGCCATTGACACCACCACATATCTCAAGCAGGATAGAAATAGCCCGCCTACCAATGGAAGGGTGTATGTTAATAGAGCACAAGATGTGGTGACCTGTATTGTCGCGAAAGGTTCAGCTATTGGACAAGATGCTGTGAACAAGGCTAAAGCATTTGATGAAAAACATCGGTTGACAGCAAGTGCGTCAGAGAAGGTTATTTCCTTTGACAAGAGAGTGGGTCTCACAGAGAAATTAACAGTAGGCTTTTCCGTGGTTAATGAGAAAGTGAAGTCTGTTGATCAAAGGCTTCATGTCTCAGATAAAACAATGGCAGCAATATTTGCGGCAGAGAGAAAATTGAATGATACGGGGTCAGCTGTCAAAACAAGCAGGTATGTGACTGCTGGAGCAGCCTGGTTAAATGGTGCTTTTGGTAAGGTGGCAAAGGCAGGACAGGCTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGGAACCTCCAATTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

284

Amino Acids

30.63

Weight (kDa)

9.08

Isoelectric Point (pI)

25.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	696, 767
AccII	CGCG	2 cut(s)	182, 440
AciI	CCGC	2 cut(s)	380, 659
AclWI	GGATC	3 cut(s)	106, 155, 168
AcsI	RAATTY	2 cut(s)	66, 312
AfaI	GTAC	2 cut(s)	249, 781
AfiI	CCNNNNNNNGG	2 cut(s)	389, 393
AgsI	TTSAA	3 cut(s)	157, 239, 676
AjnI	CCWGG	2 cut(s)	124, 728
AluBI	AGCT	5 cut(s)	10, 53, 170, 452, 692
AluI	AGCT	5 cut(s)	10, 53, 170, 452, 692
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	2 cut(s)	560, 634
AlwI	GGATC	3 cut(s)	106, 155, 168
AlwNI	CAGNNNCTG	1 cut(s)	10
ApeKI	GCWGC	8 cut(s)	4, 7, 10, 299, 647, 725, 773, 845
ApoI	RAATTY	2 cut(s)	66, 312
Asp700I	GAANNNNTTC	2 cut(s)	105, 316
AsuHPI	GGTGA	2 cut(s)	312, 436
BamHI	GGATCC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	415
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	7 cut(s)	16, 19, 286, 659, 737, 760, 832
BccI	CCATC	2 cut(s)	271, 302
BciT130I	CCWGG	2 cut(s)	126, 730
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	560, 634
BfaI	CTAG	2 cut(s)	50, 54
BfmI	CTRYAG	2 cut(s)	11, 774
BfuAI	ACCTGC	2 cut(s)	696, 767
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	9 cut(s)	5, 8, 11, 300, 648, 660, 726, 774, 846
BlsI	GCNGC	9 cut(s)	6, 9, 12, 301, 649, 661, 727, 775, 847
Bme1390I	CCNGG	2 cut(s)	126, 730
BmiI	GGNNCC	2 cut(s)	162, 834
BmrFI	CCNGG	2 cut(s)	126, 730
BmsI	GCATC	1 cut(s)	454
BplI	GAGNNNNNCTC	4 cut(s)	65, 97, 540, 572
BpmI	CTGGAG	3 cut(s)	111, 216, 741
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 393
Bse1I	ACTGG	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	126, 730
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	389, 393
BseMII	CTCAG	2 cut(s)	321, 645
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	7 cut(s)	16, 19, 286, 659, 737, 760, 832
Bsh1236I	CGCG	2 cut(s)	182, 440
BsiHKAI	GWGCWC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	389, 393
BsmAI	GTCTC	2 cut(s)	560, 634
BsmI	GAATGC	1 cut(s)	105
Bso31I	GGTCTC	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	5 cut(s)	46, 111, 160, 211, 613
Bsp68I	TCGCGA	1 cut(s)	440
BspACI	CCGC	2 cut(s)	380, 659
BspCNI	CTCAG	2 cut(s)	322, 644
BspFNI	CGCG	2 cut(s)	182, 440
BspLI	GGNNCC	2 cut(s)	162, 834
BspMAI	CTGCAG	2 cut(s)	15, 778
BspMI	ACCTGC	2 cut(s)	696, 767
BspPI	GGATC	3 cut(s)	106, 155, 168
BspTNI	GGTCTC	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	5 cut(s)	46, 111, 160, 211, 613
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	126, 730
Bst4CI	ACNGT	2 cut(s)	25, 574
BstAPI	GCANNNNNTGC	2 cut(s)	10, 656
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	2 cut(s)	330, 631
BstDSI	CCRYGG	1 cut(s)	585
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	2 cut(s)	182, 440
BstKTI	GATC	5 cut(s)	49, 114, 163, 214, 616
BstMAI	GTCTC	2 cut(s)	560, 634
BstMBI	GATC	5 cut(s)	46, 111, 160, 211, 613
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 296, 335, 656, 725, 770
BstNI	CCWGG	2 cut(s)	126, 730
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	124, 728
BstSFI	CTRYAG	2 cut(s)	11, 774
BstUI	CGCG	2 cut(s)	182, 440
BstV1I	GCAGC	7 cut(s)	16, 19, 286, 659, 737, 760, 832
BstX2I	RGATCY	3 cut(s)	46, 111, 160
BstYI	RGATCY	3 cut(s)	46, 111, 160
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	282
BtuMI	TCGCGA	1 cut(s)	440
BveI	ACCTGC	2 cut(s)	696, 767
Cac8I	GCNNGC	1 cut(s)	380
CaiI	CAGNNNCTG	1 cut(s)	10
CseI	GACGC	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	248, 780
CviAII	CATG	1 cut(s)	626
CviQI	GTAC	2 cut(s)	248, 780
DdeI	CTNAG	2 cut(s)	330, 631
DpnI	GATC	5 cut(s)	48, 113, 162, 213, 615
DpnII	GATC	5 cut(s)	46, 111, 160, 211, 613
Eco31I	GGTCTC	1 cut(s)	560
Eco91I	GGTNACC	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	124, 728
FaeI	CATG	1 cut(s)	629
FaiI	YATR	9 cut(s)	227, 246, 355, 402, 627, 711, 804, 806, 850
FatI	CATG	1 cut(s)	625
FauI	CCCGC	1 cut(s)	387
FauNDI	CATATG	1 cut(s)	804
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	9 cut(s)	5, 8, 11, 300, 648, 660, 726, 774, 846
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	9 cut(s)	5, 8, 11, 300, 648, 660, 726, 774, 846
FspBI	CTAG	2 cut(s)	50, 54
GluI	GCNGC	9 cut(s)	5, 8, 11, 300, 648, 660, 726, 774, 846
GsuI	CTGGAG	3 cut(s)	111, 216, 741
HgaI	GACGC	1 cut(s)	507
Hin1II	CATG	1 cut(s)	629
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HphI	GGTGA	2 cut(s)	312, 436
Hpy166II	GTNNAC	2 cut(s)	472, 507
Hpy188I	TCNGA	5 cut(s)	46, 111, 216, 523, 634
Hpy188III	TCNNGA	6 cut(s)	71, 90, 173, 195, 305, 439
Hpy8I	GTNNAC	2 cut(s)	472, 507
HpyAV	CCTTC	2 cut(s)	387, 520
HpyCH4III	ACNGT	2 cut(s)	25, 574
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	6 cut(s)	4, 13, 143, 776, 827, 848
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 296, 335, 656, 725, 770
HpyF3I	CTNAG	2 cut(s)	330, 631
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	629
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	5 cut(s)	46, 111, 160, 211, 613
LmnI	GCTCC	3 cut(s)	197, 307, 722
Lsp1109I	GCAGC	7 cut(s)	16, 19, 286, 659, 737, 760, 832
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	2 cut(s)	50, 54
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	3 cut(s)	148, 424, 712
MalI	GATC	5 cut(s)	48, 113, 162, 213, 615
MboI	GATC	5 cut(s)	46, 111, 160, 211, 613
MboII	GAAGA	1 cut(s)	70
MfeI	CAATTG	1 cut(s)	840
MflI	RGATCY	3 cut(s)	46, 111, 160
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	6 cut(s)	66, 241, 312, 566, 671, 840
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	3 cut(s)	12, 325, 846
MroXI	GAANNNNTTC	2 cut(s)	105, 316
MseI	TTAA	4 cut(s)	405, 569, 591, 734
MspA1I	CMGCKG	2 cut(s)	10, 692
MspR9I	CCNGG	2 cut(s)	126, 730
MunI	CAATTG	1 cut(s)	840
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	126, 730
MvnI	CGCG	2 cut(s)	182, 440
MwoI	GCNNNNNNNGC	6 cut(s)	10, 296, 335, 656, 725, 770
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	5 cut(s)	46, 111, 160, 211, 613
NlaIII	CATG	1 cut(s)	629
NlaIV	GGNNCC	2 cut(s)	162, 834
NmuCI	GTSAC	2 cut(s)	424, 712
NruI	TCGCGA	1 cut(s)	440
PctI	GAATGC	1 cut(s)	105
PdmI	GAANNNNTTC	2 cut(s)	105, 316
PkrI	GCNGC	9 cut(s)	6, 9, 12, 301, 649, 661, 727, 775, 847
Psp6I	CCWGG	2 cut(s)	124, 728
PspEI	GGTNACC	1 cut(s)	424
PspGI	CCWGG	2 cut(s)	124, 728
PspN4I	GGNNCC	2 cut(s)	162, 834
PstI	CTGCAG	2 cut(s)	15, 778
PstNI	CAGNNNCTG	1 cut(s)	10
PsuI	RGATCY	3 cut(s)	46, 111, 160
PvuII	CAGCTG	2 cut(s)	10, 692
RruI	TCGCGA	1 cut(s)	440
RsaI	GTAC	2 cut(s)	249, 781
RsaNI	GTAC	2 cut(s)	248, 780
SaqAI	TTAA	4 cut(s)	405, 569, 591, 734
SatI	GCNGC	9 cut(s)	5, 8, 11, 300, 648, 660, 726, 774, 846
Sau3AI	GATC	5 cut(s)	46, 111, 160, 211, 613
ScrFI	CCNGG	2 cut(s)	126, 730
SduI	GDGCHC	1 cut(s)	415
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	2 cut(s)	11, 774
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	6 cut(s)	66, 241, 312, 566, 671, 840
SsiI	CCGC	2 cut(s)	380, 659
SspI	AATATT	1 cut(s)	654
SspMI	CTAG	2 cut(s)	50, 54
StyD4I	CCNGG	2 cut(s)	124, 728
TaaI	ACNGT	2 cut(s)	25, 574
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	99, 174
TasI	AATT	6 cut(s)	66, 241, 312, 566, 671, 840
TauI	GCSGC	1 cut(s)	662
Tru1I	TTAA	4 cut(s)	405, 569, 591, 734
Tru9I	TTAA	4 cut(s)	405, 569, 591, 734
TseFI	GTSAC	2 cut(s)	424, 712
TseI	GCWGC	8 cut(s)	4, 7, 10, 299, 647, 725, 773, 845
Tsp45I	GTSAC	2 cut(s)	424, 712
TspDTI	ATGAA	2 cut(s)	507, 614
TspGWI	ACGGA	1 cut(s)	574
XapI	RAATTY	2 cut(s)	66, 312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmnI	GAANNNNTTC	2 cut(s)	105, 316
XspI	CTAG	2 cut(s)	50, 54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.