RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 172 |
| AciI | CCGC | 1 cut(s) | 283 |
| AcsI | RAATTY | 7 cut(s) | 738, 968, 1059, 1079, 1241, 1276, 1412 |
| AcuI | CTGAAG | 3 cut(s) | 447, 494, 849 |
| AdeI | CACNNNGTG | 1 cut(s) | 342 |
| AfaI | GTAC | 2 cut(s) | 72, 81 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 574 |
| AgsI | TTSAA | 6 cut(s) | 244, 371, 491, 512, 1350, 1418 |
| Alw21I | GWGCWC | 1 cut(s) | 561 |
| Alw26I | GTCTC | 1 cut(s) | 1415 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 326 |
| AoxI | GGCC | 1 cut(s) | 747 |
| ApeKI | GCWGC | 7 cut(s) | 64, 130, 320, 323, 326, 1048, 1301 |
| ApoI | RAATTY | 7 cut(s) | 738, 968, 1059, 1079, 1241, 1276, 1412 |
| AseI | ATTAAT | 2 cut(s) | 584, 879 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 507 |
| AspS9I | GGNCC | 1 cut(s) | 748 |
| AsuHPI | GGTGA | 7 cut(s) | 64, 211, 290, 431, 812, 986, 1225 |
| BanII | GRGCYC | 1 cut(s) | 11 |
| BbsI | GAAGAC | 2 cut(s) | 378, 1394 |
| Bbv12I | GWGCWC | 1 cut(s) | 561 |
| BbvI | GCAGC | 7 cut(s) | 76, 142, 313, 332, 335, 1060, 1313 |
| BccI | CCATC | 2 cut(s) | 269, 779 |
| BceAI | ACGGC | 2 cut(s) | 270, 1287 |
| BciVI | GTATCC | 1 cut(s) | 1386 |
| BclI | TGATCA | 3 cut(s) | 729, 1266, 1318 |
| BcoDI | GTCTC | 1 cut(s) | 1415 |
| BfaI | CTAG | 3 cut(s) | 810, 1406, 1447 |
| BfmI | CTRYAG | 3 cut(s) | 312, 945, 1299 |
| BfuAI | ACCTGC | 1 cut(s) | 172 |
| BfuI | GTATCC | 1 cut(s) | 1386 |
| BisI | GCNGC | 7 cut(s) | 65, 131, 321, 324, 327, 1049, 1302 |
| BlpI | GCTNAGC | 1 cut(s) | 543 |
| BlsI | GCNGC | 7 cut(s) | 66, 132, 322, 325, 328, 1050, 1303 |
| BmgT120I | GGNCC | 1 cut(s) | 748 |
| BmsI | GCATC | 3 cut(s) | 373, 845, 1222 |
| BpiI | GAAGAC | 2 cut(s) | 378, 1394 |
| BpmI | CTGGAG | 1 cut(s) | 114 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 543 |
| BpuEI | CTTGAG | 2 cut(s) | 868, 1231 |
| BsaAI | YACGTR | 1 cut(s) | 79 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 574 |
| Bse1I | ACTGG | 2 cut(s) | 494, 739 |
| BseGI | GGATG | 1 cut(s) | 214 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 574 |
| BseMII | CTCAG | 3 cut(s) | 534, 795, 1190 |
| BseNI | ACTGG | 2 cut(s) | 494, 739 |
| BseRI | GAGGAG | 2 cut(s) | 218, 1089 |
| BseXI | GCAGC | 7 cut(s) | 76, 142, 313, 332, 335, 1060, 1313 |
| BseYI | CCCAGC | 1 cut(s) | 236 |
| BshFI | GGCC | 1 cut(s) | 749 |
| BsiHKAI | GWGCWC | 1 cut(s) | 561 |
| BslFI | GGGAC | 1 cut(s) | 1268 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 574 |
| BsmAI | GTCTC | 1 cut(s) | 1415 |
| BsmFI | GGGAC | 1 cut(s) | 1268 |
| BsnI | GGCC | 1 cut(s) | 749 |
| Bsp1286I | GDGCHC | 2 cut(s) | 11, 561 |
| Bsp143I | GATC | 4 cut(s) | 54, 729, 1266, 1318 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 543 |
| BspACI | CCGC | 1 cut(s) | 283 |
| BspANI | GGCC | 1 cut(s) | 749 |
| BspCNI | CTCAG | 3 cut(s) | 535, 794, 1189 |
| BspMAI | CTGCAG | 1 cut(s) | 1303 |
| BspMI | ACCTGC | 1 cut(s) | 172 |
| BsrI | ACTGG | 2 cut(s) | 494, 739 |
| BssMI | GATC | 4 cut(s) | 54, 729, 1266, 1318 |
| Bst4CI | ACNGT | 6 cut(s) | 34, 256, 342, 537, 889, 1225 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 187, 326, 1111 |
| BstBAI | YACGTR | 1 cut(s) | 79 |
| BstC8I | GCNNGC | 4 cut(s) | 11, 549, 627, 1103 |
| BstDEI | CTNAG | 5 cut(s) | 543, 781, 984, 1065, 1176 |
| BstEII | GGTNACC | 1 cut(s) | 278 |
| BstF5I | GGATG | 1 cut(s) | 214 |
| BstKTI | GATC | 4 cut(s) | 57, 732, 1269, 1321 |
| BstMAI | GTCTC | 1 cut(s) | 1415 |
| BstMBI | GATC | 4 cut(s) | 54, 729, 1266, 1318 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 187, 317, 326, 355, 548, 635, 1111 |
| BstNSI | RCATGY | 1 cut(s) | 629 |
| BstPI | GGTNACC | 1 cut(s) | 278 |
| BstSFI | CTRYAG | 3 cut(s) | 312, 945, 1299 |
| BstSNI | TACGTA | 1 cut(s) | 79 |
| BstV1I | GCAGC | 7 cut(s) | 76, 142, 313, 332, 335, 1060, 1313 |
| BstV2I | GAAGAC | 2 cut(s) | 378, 1394 |
| BsuI | GTATCC | 1 cut(s) | 1386 |
| BsuRI | GGCC | 1 cut(s) | 749 |
| BtgZI | GCGATG | 1 cut(s) | 45 |
| BtsCI | GGATG | 1 cut(s) | 214 |
| BtsI | GCAGTG | 1 cut(s) | 393 |
| BtsIMutI | CAGTG | 3 cut(s) | 338, 393, 732 |
| BveI | ACCTGC | 1 cut(s) | 172 |
| Cac8I | GCNNGC | 4 cut(s) | 11, 549, 627, 1103 |
| CaiI | CAGNNNCTG | 1 cut(s) | 326 |
| Cfr13I | GGNCC | 1 cut(s) | 748 |
| Csp6I | GTAC | 2 cut(s) | 71, 80 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 132, 167 |
| CviQI | GTAC | 2 cut(s) | 71, 80 |
| DdeI | CTNAG | 5 cut(s) | 543, 781, 984, 1065, 1176 |
| DpnI | GATC | 4 cut(s) | 56, 731, 1268, 1320 |
| DpnII | GATC | 4 cut(s) | 54, 729, 1266, 1318 |
| DraI | TTTAAA | 1 cut(s) | 114 |
| DraIII | CACNNNGTG | 1 cut(s) | 342 |
| Eco105I | TACGTA | 1 cut(s) | 79 |
| Eco24I | GRGCYC | 1 cut(s) | 11 |
| Eco57I | CTGAAG | 3 cut(s) | 447, 494, 849 |
| Eco91I | GGTNACC | 1 cut(s) | 278 |
| EcoO109I | RGGNCCY | 1 cut(s) | 748 |
| EcoO65I | GGTNACC | 1 cut(s) | 278 |
| EcoRI | GAATTC | 1 cut(s) | 1241 |
| EcoT38I | GRGCYC | 1 cut(s) | 11 |
| FaqI | GGGAC | 1 cut(s) | 1268 |
| FauNDI | CATATG | 1 cut(s) | 1285 |
| FbaI | TGATCA | 3 cut(s) | 729, 1266, 1318 |
| Fnu4HI | GCNGC | 7 cut(s) | 65, 131, 321, 324, 327, 1049, 1302 |
| FokI | GGATG | 1 cut(s) | 221 |
| FriOI | GRGCYC | 1 cut(s) | 11 |
| Fsp4HI | GCNGC | 7 cut(s) | 65, 131, 321, 324, 327, 1049, 1302 |
| FspBI | CTAG | 3 cut(s) | 810, 1406, 1447 |
| GluI | GCNGC | 7 cut(s) | 65, 131, 321, 324, 327, 1049, 1302 |
| GsaI | CCCAGC | 1 cut(s) | 240 |
| GsuI | CTGGAG | 1 cut(s) | 114 |
| HaeIII | GGCC | 1 cut(s) | 749 |
| HinfI | GANTC | 3 cut(s) | 422, 1163, 1174 |
| HphI | GGTGA | 7 cut(s) | 64, 211, 290, 431, 812, 986, 1225 |
| Hpy166II | GTNNAC | 2 cut(s) | 71, 803 |
| Hpy188I | TCNGA | 3 cut(s) | 427, 784, 1179 |
| Hpy188III | TCNNGA | 6 cut(s) | 368, 512, 590, 1238, 1322, 1418 |
| Hpy8I | GTNNAC | 2 cut(s) | 71, 803 |
| HpyAV | CCTTC | 4 cut(s) | 374, 422, 592, 628 |
| HpyCH4III | ACNGT | 6 cut(s) | 34, 256, 342, 537, 889, 1225 |
| HpyCH4IV | ACGT | 1 cut(s) | 78 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 187, 317, 326, 355, 548, 635, 1111 |
| HpyF3I | CTNAG | 5 cut(s) | 543, 781, 984, 1065, 1176 |
| HpySE526I | ACGT | 1 cut(s) | 78 |
| Ksp22I | TGATCA | 3 cut(s) | 729, 1266, 1318 |
| Kzo9I | GATC | 4 cut(s) | 54, 729, 1266, 1318 |
| LmnI | GCTCC | 3 cut(s) | 95, 127, 622 |
| Lsp1109I | GCAGC | 7 cut(s) | 76, 142, 313, 332, 335, 1060, 1313 |
| LweI | GCATC | 3 cut(s) | 373, 845, 1222 |
| MaeI | CTAG | 3 cut(s) | 810, 1406, 1447 |
| MaeII | ACGT | 1 cut(s) | 78 |
| MaeIII | GTNAC | 5 cut(s) | 39, 278, 287, 919, 1219 |
| MalI | GATC | 4 cut(s) | 56, 731, 1268, 1320 |
| MboI | GATC | 4 cut(s) | 54, 729, 1266, 1318 |
| MfeI | CAATTG | 1 cut(s) | 1370 |
| MhlI | GDGCHC | 2 cut(s) | 11, 561 |
| MlyI | GAGTC | 1 cut(s) | 1168 |
| MmeI | TCCRAC | 1 cut(s) | 1124 |
| MnlI | CCTC | 9 cut(s) | 171, 196, 199, 408, 568, 831, 843, 933, 1067 |
| MroXI | GAANNNNTTC | 1 cut(s) | 507 |
| MseI | TTAA | 5 cut(s) | 113, 584, 795, 828, 879 |
| MslI | CAYNNNNRTG | 2 cut(s) | 197, 686 |
| MspA1I | CMGCKG | 3 cut(s) | 92, 133, 326 |
| MunI | CAATTG | 1 cut(s) | 1370 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 187, 317, 326, 355, 548, 635, 1111 |
| NdeI | CATATG | 1 cut(s) | 1285 |
| NdeII | GATC | 4 cut(s) | 54, 729, 1266, 1318 |
| NmuCI | GTSAC | 1 cut(s) | 278 |
| NspI | RCATGY | 1 cut(s) | 629 |
| PaeI | GCATGC | 1 cut(s) | 629 |
| PdmI | GAANNNNTTC | 1 cut(s) | 507 |
| PfeI | GAWTC | 2 cut(s) | 422, 1163 |
| PkrI | GCNGC | 7 cut(s) | 66, 132, 322, 325, 328, 1050, 1303 |
| PleI | GAGTC | 1 cut(s) | 1168 |
| PpsI | GAGTC | 1 cut(s) | 1168 |
| Ppu21I | YACGTR | 1 cut(s) | 79 |
| PshBI | ATTAAT | 2 cut(s) | 584, 879 |
| PspEI | GGTNACC | 1 cut(s) | 278 |
| PspFI | CCCAGC | 1 cut(s) | 236 |
| PspPI | GGNCC | 1 cut(s) | 748 |
| PstI | CTGCAG | 1 cut(s) | 1303 |
| PstNI | CAGNNNCTG | 1 cut(s) | 326 |
| PvuII | CAGCTG | 3 cut(s) | 92, 133, 326 |
| RsaI | GTAC | 2 cut(s) | 72, 81 |
| RsaNI | GTAC | 2 cut(s) | 71, 80 |
| RseI | CAYNNNNRTG | 2 cut(s) | 197, 686 |
| SaqAI | TTAA | 5 cut(s) | 113, 584, 795, 828, 879 |
| SatI | GCNGC | 7 cut(s) | 65, 131, 321, 324, 327, 1049, 1302 |
| Sau3AI | GATC | 4 cut(s) | 54, 729, 1266, 1318 |
| Sau96I | GGNCC | 1 cut(s) | 748 |
| SchI | GAGTC | 1 cut(s) | 1168 |
| SduI | GDGCHC | 2 cut(s) | 11, 561 |
| SfaNI | GCATC | 3 cut(s) | 373, 845, 1222 |
| SfcI | CTRYAG | 3 cut(s) | 312, 945, 1299 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 197, 686 |
| SmlI | CTYRAG | 2 cut(s) | 847, 1246 |
| SmoI | CTYRAG | 2 cut(s) | 847, 1246 |
| SnaBI | TACGTA | 1 cut(s) | 79 |
| SphI | GCATGC | 1 cut(s) | 629 |
| SsiI | CCGC | 1 cut(s) | 283 |
| SspI | AATATT | 2 cut(s) | 172, 1044 |
| SspMI | CTAG | 3 cut(s) | 810, 1406, 1447 |
| TaaI | ACNGT | 6 cut(s) | 34, 256, 342, 537, 889, 1225 |
| TaiI | ACGT | 1 cut(s) | 81 |
| TaqI | TCGA | 2 cut(s) | 251, 498 |
| TfiI | GAWTC | 2 cut(s) | 422, 1163 |
| Tru1I | TTAA | 5 cut(s) | 113, 584, 795, 828, 879 |
| Tru9I | TTAA | 5 cut(s) | 113, 584, 795, 828, 879 |
| TscAI | CASTG | 3 cut(s) | 345, 393, 739 |
| TseFI | GTSAC | 1 cut(s) | 278 |
| TseI | GCWGC | 7 cut(s) | 64, 130, 320, 323, 326, 1048, 1301 |
| Tsp45I | GTSAC | 1 cut(s) | 278 |
| TspRI | CASTG | 3 cut(s) | 345, 393, 739 |
| VspI | ATTAAT | 2 cut(s) | 584, 879 |
| XapI | RAATTY | 7 cut(s) | 738, 968, 1059, 1079, 1241, 1276, 1412 |
| XceI | RCATGY | 1 cut(s) | 629 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 229 |
| XmnI | GAANNNNTTC | 1 cut(s) | 507 |
| XspI | CTAG | 3 cut(s) | 810, 1406, 1447 |