Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Forward (+)

33126965 .. 33128926

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56810

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTATTGTCGAGTTGATCCTGCGCAATCAAAGATTGCATTTGTTATGTTCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGCAATTGGTGGAAAGTGCTGTTTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGTTGAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAAAGAAATTTACAGTAGGCTTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGCTTGGTTCAATGGTGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

170

Amino Acids

18.53

Weight (kDa)

9.28

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
AclWI	GGATC	2 cut(s)	11, 478
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	52, 71, 500
AhdI	GACNNNNNGTC	1 cut(s)	410
AluBI	AGCT	3 cut(s)	65, 197, 492
AluI	AGCT	3 cut(s)	65, 197, 492
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	2 cut(s)	11, 478
ApeKI	GCWGC	4 cut(s)	116, 431, 443, 489
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	129
BanII	GRGCYC	2 cut(s)	199, 342
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	4 cut(s)	103, 443, 455, 501
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	213
BisI	GCNGC	4 cut(s)	117, 432, 444, 490
BlsI	GCNGC	4 cut(s)	118, 433, 445, 491
BmeRI	GACNNNNNGTC	1 cut(s)	410
BmsI	GCATC	4 cut(s)	46, 238, 292, 311
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpuEI	CTTGAG	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	472
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	472
BseXI	GCAGC	4 cut(s)	103, 443, 455, 501
BsiHKAI	GWGCWC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	418
Bso31I	GGTCTC	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	199, 342
Bsp143I	GATC	3 cut(s)	16, 397, 470
BspCNI	CTCAG	1 cut(s)	298
BspPI	GGATC	2 cut(s)	11, 478
BspTNI	GGTCTC	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	472
BssMI	GATC	3 cut(s)	16, 397, 470
Bst4CI	ACNGT	2 cut(s)	358, 478
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	3 cut(s)	19, 400, 473
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	3 cut(s)	16, 397, 470
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 122, 440
BstV1I	GCAGC	4 cut(s)	103, 443, 455, 501
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	375
CfoI	GCGC	1 cut(s)	25
CviJI	RGCY	7 cut(s)	65, 162, 197, 263, 340, 363, 492
CviKI_1	RGCY	7 cut(s)	65, 162, 197, 263, 340, 363, 492
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	3 cut(s)	18, 399, 472
DpnII	GATC	3 cut(s)	16, 397, 470
DriI	GACNNNNNGTC	1 cut(s)	410
Eam1105I	GACNNNNNGTC	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	199, 342
Eco31I	GGTCTC	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	199, 342
FaiI	YATR	3 cut(s)	47, 186, 218
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	4 cut(s)	117, 432, 444, 490
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	2 cut(s)	199, 342
Fsp4HI	GCNGC	4 cut(s)	117, 432, 444, 490
FspBI	CTAG	1 cut(s)	213
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	4 cut(s)	117, 432, 444, 490
HhaI	GCGC	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HpaI	GTTAAC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	256, 376
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	2 cut(s)	68, 200
Hpy8I	GTNNAC	2 cut(s)	256, 376
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	2 cut(s)	358, 478
HpyCH4V	TGCA	4 cut(s)	38, 224, 302, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 122, 440
HpyF3I	CTNAG	1 cut(s)	306
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	16, 397, 470
LpnPI	CCDG	4 cut(s)	33, 135, 395, 453
Lsp1109I	GCAGC	4 cut(s)	103, 443, 455, 501
LweI	GCATC	4 cut(s)	46, 238, 292, 311
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	18, 399, 472
MboI	GATC	3 cut(s)	16, 397, 470
MfeI	CAATTG	2 cut(s)	92, 237
MhlI	GDGCHC	2 cut(s)	199, 342
MluCI	AATT	4 cut(s)	92, 237, 350, 455
MnlI	CCTC	1 cut(s)	142
MseI	TTAA	2 cut(s)	375, 458
MunI	CAATTG	2 cut(s)	92, 237
MwoI	GCNNNNNNNGC	3 cut(s)	113, 122, 440
NdeII	GATC	3 cut(s)	16, 397, 470
NsbI	TGCGCA	1 cut(s)	24
PkrI	GCNGC	4 cut(s)	118, 433, 445, 491
Psp124BI	GAGCTC	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	375, 458
SatI	GCNGC	4 cut(s)	117, 432, 444, 490
Sau3AI	GATC	3 cut(s)	16, 397, 470
SduI	GDGCHC	2 cut(s)	199, 342
SetI	ASST	5 cut(s)	67, 199, 232, 414, 494
SfaNI	GCATC	4 cut(s)	46, 238, 292, 311
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	4 cut(s)	92, 237, 350, 455
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	358, 478
TaqI	TCGA	1 cut(s)	10
TasI	AATT	4 cut(s)	92, 237, 350, 455
Tru1I	TTAA	2 cut(s)	375, 458
Tru9I	TTAA	2 cut(s)	375, 458
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	4 cut(s)	116, 431, 443, 489
TspDTI	ATGAA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	375
XapI	RAATTY	1 cut(s)	350
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.