Rh3DG366200

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000747
Physical Location & Seq
Forward (+)
45879554 .. 45883505
3952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG366200.1

Sequence Viewer

Length: 624 bp
ATGGGCGTGAGGAGGAGCCTAGTTGAACACCTAGTTTTCCGGATGGCAATCACATATCTTTCTTGCTGGTCTAACATGCCAAGAGCGAGAGGCAAGAAGGGAACGTTGGTTGCAGCTCAAACCTCATTCTTTTCCAATCACGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTACGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGCAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAGAGAAATTGACAGTAGGCCTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAGATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAGCTGTCAAAACAAGCAGGTATGTGACTGCGGGAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGCTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGGATCCAATAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

207

Amino Acids

22.4

Weight (kDa)

10.26

Isoelectric Point (pI)

21.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 471, 542
AccIII TCCGGA 1 cut(s) 39
AciI CCGC 1 cut(s) 494
AclI AACGTT 1 cut(s) 104
AclWI GGATC 3 cut(s) 469, 602, 615
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 2 cut(s) 176, 556
AfiI CCNNNNNNNGG 2 cut(s) 164, 361
AgsI TTSAA 2 cut(s) 26, 511
AhdI GACNNNNNGTC 1 cut(s) 401
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 5 cut(s) 116, 188, 467, 503, 617
AluI AGCT 5 cut(s) 116, 188, 467, 503, 617
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 3 cut(s) 469, 602, 615
Aor13HI TCCGGA 1 cut(s) 39
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 6 cut(s) 113, 422, 434, 500, 548, 617
BamHI GGATCC 1 cut(s) 607
BanII GRGCYC 2 cut(s) 190, 333
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 6 cut(s) 125, 434, 446, 512, 535, 604
BccI CCATC 2 cut(s) 37, 143
BceAI ACGGC 1 cut(s) 227
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 3 cut(s) 20, 32, 204
BfmI CTRYAG 1 cut(s) 549
BfuAI ACCTGC 2 cut(s) 471, 542
BisI GCNGC 6 cut(s) 114, 423, 435, 501, 549, 618
BlsI GCNGC 6 cut(s) 115, 424, 436, 502, 550, 619
BmeRI GACNNNNNGTC 1 cut(s) 401
BmiI GGNNCC 2 cut(s) 17, 609
BmsI GCATC 3 cut(s) 229, 283, 302
BplI GAGNNNNNCTC 2 cut(s) 315, 347
BpuEI CTTGAG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 409
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 361
Bse1I ACTGG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 47
BseAI TCCGGA 1 cut(s) 39
BseGI GGATG 1 cut(s) 48
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 164, 361
BseMII CTCAG 2 cut(s) 288, 420
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 25, 28
BseXI GCAGC 6 cut(s) 125, 434, 446, 512, 535, 604
BshFI GGCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 164, 361
BsmAI GTCTC 1 cut(s) 409
BsnI GGCC 1 cut(s) 354
Bso31I GGTCTC 1 cut(s) 409
Bsp1286I GDGCHC 2 cut(s) 190, 333
Bsp13I TCCGGA 1 cut(s) 39
Bsp143I GATC 3 cut(s) 388, 461, 607
BspACI CCGC 1 cut(s) 494
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 2 cut(s) 289, 419
BspEI TCCGGA 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 17, 609
BspMAI CTGCAG 1 cut(s) 553
BspMI ACCTGC 2 cut(s) 471, 542
BspPI GGATC 3 cut(s) 469, 602, 615
BspTNI GGTCTC 1 cut(s) 409
BsrI ACTGG 1 cut(s) 463
BssMI GATC 3 cut(s) 388, 461, 607
Bst4CI ACNGT 1 cut(s) 349
BstAPI GCANNNNNTGC 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 297, 406
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 3 cut(s) 391, 464, 610
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 3 cut(s) 388, 461, 607
BstMWI GCNNNNNNNGC 3 cut(s) 431, 500, 545
BstNSI RCATGY 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 549
BstSNI TACGTA 1 cut(s) 178
BstV1I GCAGC 6 cut(s) 125, 434, 446, 512, 535, 604
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 1 cut(s) 354
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 2 cut(s) 471, 542
Cac8I GCNNGC 1 cut(s) 546
Csp6I GTAC 2 cut(s) 175, 555
CviAII CATG 1 cut(s) 76
CviQI GTAC 2 cut(s) 175, 555
DdeI CTNAG 2 cut(s) 297, 406
DpnI GATC 3 cut(s) 390, 463, 609
DpnII GATC 3 cut(s) 388, 461, 607
DriI GACNNNNNGTC 1 cut(s) 401
Eam1105I GACNNNNNGTC 1 cut(s) 401
Ecl136II GAGCTC 1 cut(s) 188
Eco105I TACGTA 1 cut(s) 178
Eco147I AGGCCT 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 190, 333
Eco31I GGTCTC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 188
EcoT38I GRGCYC 2 cut(s) 190, 333
FaeI CATG 1 cut(s) 79
FaiI YATR 7 cut(s) 55, 77, 209, 486, 579, 581, 622
FatI CATG 1 cut(s) 75
FauI CCCGC 1 cut(s) 487
FauNDI CATATG 1 cut(s) 579
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 6 cut(s) 114, 423, 435, 501, 549, 618
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 2 cut(s) 190, 333
Fsp4HI GCNGC 6 cut(s) 114, 423, 435, 501, 549, 618
FspBI CTAG 3 cut(s) 20, 32, 204
GluI GCNGC 6 cut(s) 114, 423, 435, 501, 549, 618
HaeIII GGCC 1 cut(s) 354
HapII CCGG 1 cut(s) 40
Hin1II CATG 1 cut(s) 79
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 1 cut(s) 40
Hpy166II GTNNAC 3 cut(s) 175, 247, 367
Hpy188I TCNGA 2 cut(s) 298, 409
Hpy188III TCNNGA 3 cut(s) 40, 140, 191
Hpy8I GTNNAC 3 cut(s) 175, 247, 367
HpyAV CCTTC 2 cut(s) 91, 162
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 104, 177
HpyCH4V TGCA 7 cut(s) 113, 215, 293, 434, 551, 602, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 500, 545
HpyF3I CTNAG 2 cut(s) 297, 406
HpySE526I ACGT 2 cut(s) 104, 177
Hsp92II CATG 1 cut(s) 79
Kpn2I TCCGGA 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 388
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 388, 461, 607
LmnI GCTCC 2 cut(s) 15, 497
LpnPI CCDG 9 cut(s) 52, 53, 386, 444, 466, 525, 530, 537, 577
Lsp1109I GCAGC 6 cut(s) 125, 434, 446, 512, 535, 604
LweI GCATC 3 cut(s) 229, 283, 302
MaeI CTAG 3 cut(s) 20, 32, 204
MaeII ACGT 2 cut(s) 104, 177
MaeIII GTNAC 2 cut(s) 304, 487
MalI GATC 3 cut(s) 390, 463, 609
MboI GATC 3 cut(s) 388, 461, 607
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 2 cut(s) 190, 333
MluCI AATT 3 cut(s) 228, 341, 446
MnlI CCTC 4 cut(s) 3, 6, 83, 133
MroI TCCGGA 1 cut(s) 39
MseI TTAA 2 cut(s) 366, 449
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 431, 500, 545
NdeI CATATG 1 cut(s) 579
NdeII GATC 3 cut(s) 388, 461, 607
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 17, 609
NmuCI GTSAC 1 cut(s) 487
NspI RCATGY 1 cut(s) 79
PceI AGGCCT 1 cut(s) 354
PkrI GCNGC 6 cut(s) 115, 424, 436, 502, 550, 619
Ppu21I YACGTR 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 190
Psp1406I AACGTT 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 17, 609
PstI CTGCAG 1 cut(s) 553
PsuI RGATCY 1 cut(s) 607
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 176, 556
RsaNI GTAC 2 cut(s) 175, 555
SacI GAGCTC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 366, 449
SatI GCNGC 6 cut(s) 114, 423, 435, 501, 549, 618
Sau3AI GATC 3 cut(s) 388, 461, 607
SduI GDGCHC 2 cut(s) 190, 333
SfaNI GCATC 3 cut(s) 229, 283, 302
SfcI CTRYAG 1 cut(s) 549
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
SnaBI TACGTA 1 cut(s) 178
Sse9I AATT 3 cut(s) 228, 341, 446
SseBI AGGCCT 1 cut(s) 354
SsiI CCGC 1 cut(s) 494
SspI AATATT 1 cut(s) 429
SspMI CTAG 3 cut(s) 20, 32, 204
SstI GAGCTC 1 cut(s) 190
StuI AGGCCT 1 cut(s) 354
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 107, 180
TasI AATT 3 cut(s) 228, 341, 446
Tru1I TTAA 2 cut(s) 366, 449
Tru9I TTAA 2 cut(s) 366, 449
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 6 cut(s) 113, 422, 434, 500, 548, 617
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 366
XceI RCATGY 1 cut(s) 79
XspI CTAG 3 cut(s) 20, 32, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.