Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

42579487 .. 42587553

Gene Structure 8067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG318800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAGAGAAATCGACAGTAGGCTTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGGTATGTGACTGTGGCAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGACAGGGCAGGCTGCAGGTACGAAAACTAGAGAAAAGTTCCATATGGTTGTGTCAAACTTGACTGCAAAGGAGCGTGGAGCTGGAATTGGCCCAGAGCAATCGGGTACGGGTAATCAGGTTGGACCGAGAGTGAGTGGGAATGAGAGGTTGCCTGGTGCTGTTGTGCTTGCTAGGGAGAGGCTACTTTGGAAACCAGACGACGCAGGGCATTACATATATATAGGAGTGTTCTACTTGGTGATGATCACAGCCTTGCCCAATCTAGAGGTTCACGAGCTGGATGAGCTCCCGGAGCAGTGGCAGAGGTTCAAGTTGGCTTGGCTTTGTAAGGAGCTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

223

Amino Acids

24.53

Weight (kDa)

9.63

Isoelectric Point (pI)

21.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	264, 335
AclWI	GGATC	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	2 cut(s)	349, 436
AgsI	TTSAA	2 cut(s)	304, 640
AhdI	GACNNNNNGTC	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	5 cut(s)	296, 410, 607, 616, 664
AluI	AGCT	5 cut(s)	296, 410, 607, 616, 664
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	6 cut(s)	215, 227, 290, 293, 341, 664
AspS9I	GGNCC	2 cut(s)	419, 452
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	580
AvaII	GGWCC	1 cut(s)	452
BanII	GRGCYC	2 cut(s)	126, 618
BauI	CACGAG	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	6 cut(s)	227, 239, 302, 305, 328, 651
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	483
BclI	TGATCA	2 cut(s)	181, 573
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	4 cut(s)	357, 501, 593, 670
BfmI	CTRYAG	1 cut(s)	342
BfuAI	ACCTGC	2 cut(s)	264, 335
BisI	GCNGC	6 cut(s)	216, 228, 291, 294, 342, 665
BlsI	GCNGC	6 cut(s)	217, 229, 292, 295, 343, 666
Bme1390I	CCNGG	2 cut(s)	483, 620
Bme18I	GGWCC	1 cut(s)	452
BmeRI	GACNNNNNGTC	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	419, 452
BmrFI	CCNGG	2 cut(s)	483, 620
BmsI	GCATC	3 cut(s)	22, 76, 95
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BpuMI	CCSGG	1 cut(s)	620
BsaI	GGTCTC	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	616
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	6 cut(s)	227, 239, 302, 305, 328, 651
BshFI	GGCC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	420
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	126, 618
Bsp143I	GATC	3 cut(s)	181, 254, 573
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	346
BspMI	ACCTGC	2 cut(s)	264, 335
BspPI	GGATC	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	181, 254, 573
BssSI	CACGAG	1 cut(s)	602
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	142, 262, 286
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	339, 498
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	616
BstKTI	GATC	3 cut(s)	184, 257, 576
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	181, 254, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 613, 622
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	481, 618
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	6 cut(s)	227, 239, 302, 305, 328, 651
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	1 cut(s)	632
BtsIMutI	CAGTG	2 cut(s)	159, 632
BveI	ACCTGC	2 cut(s)	264, 335
Cac8I	GCNNGC	2 cut(s)	339, 498
Cfr13I	GGNCC	2 cut(s)	419, 452
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	2 cut(s)	348, 435
CviQI	GTAC	2 cut(s)	348, 435
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	3 cut(s)	183, 256, 575
DpnII	GATC	3 cut(s)	181, 254, 573
DriI	GACNNNNNGTC	1 cut(s)	194
Eam1105I	GACNNNNNGTC	1 cut(s)	194
Ecl136II	GAGCTC	1 cut(s)	616
Eco24I	GRGCYC	2 cut(s)	126, 618
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	452
Eco53kI	GAGCTC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	481
EcoT38I	GRGCYC	2 cut(s)	126, 618
FaiI	YATR	7 cut(s)	279, 372, 374, 545, 547, 549, 551
FauNDI	CATATG	1 cut(s)	372
FbaI	TGATCA	2 cut(s)	181, 573
Fnu4HI	GCNGC	6 cut(s)	216, 228, 291, 294, 342, 665
FokI	GGATG	1 cut(s)	623
FriOI	GRGCYC	2 cut(s)	126, 618
Fsp4HI	GCNGC	6 cut(s)	216, 228, 291, 294, 342, 665
FspBI	CTAG	4 cut(s)	357, 501, 593, 670
GluI	GCNGC	6 cut(s)	216, 228, 291, 294, 342, 665
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	1 cut(s)	620
HgaI	GACGC	1 cut(s)	539
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	3 cut(s)	40, 160, 601
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	593, 602
Hpy8I	GTNNAC	3 cut(s)	40, 160, 601
Hpy99I	CGWCG	1 cut(s)	533
HpyCH4III	ACNGT	3 cut(s)	142, 262, 286
HpyCH4V	TGCA	5 cut(s)	8, 86, 227, 344, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 613, 622
HpyF3I	CTNAG	1 cut(s)	90
Ksp22I	TGATCA	2 cut(s)	181, 573
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	181, 254, 573
LmnI	GCTCC	5 cut(s)	400, 407, 621, 622, 661
Lsp1109I	GCAGC	6 cut(s)	227, 239, 302, 305, 328, 651
LweI	GCATC	3 cut(s)	22, 76, 95
MaeI	CTAG	4 cut(s)	357, 501, 593, 670
MaeIII	GTNAC	2 cut(s)	97, 280
MalI	GATC	3 cut(s)	183, 256, 575
MboI	GATC	3 cut(s)	181, 254, 573
MfeI	CAATTG	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	126, 618
MluCI	AATT	3 cut(s)	21, 239, 414
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	4 cut(s)	468, 501, 589, 627
MseI	TTAA	2 cut(s)	159, 242
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	2 cut(s)	483, 620
MunI	CAATTG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	3 cut(s)	224, 613, 622
NciI	CCSGG	1 cut(s)	620
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	3 cut(s)	181, 254, 573
NmuCI	GTSAC	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	6 cut(s)	217, 229, 292, 295, 343, 666
Psp124BI	GAGCTC	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspPI	GGNCC	2 cut(s)	419, 452
PstI	CTGCAG	1 cut(s)	346
RsaI	GTAC	2 cut(s)	349, 436
RsaNI	GTAC	2 cut(s)	348, 435
SacI	GAGCTC	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	159, 242
SatI	GCNGC	6 cut(s)	216, 228, 291, 294, 342, 665
Sau3AI	GATC	3 cut(s)	181, 254, 573
Sau96I	GGNCC	2 cut(s)	419, 452
ScrFI	CCNGG	2 cut(s)	483, 620
SduI	GDGCHC	2 cut(s)	126, 618
SfaNI	GCATC	3 cut(s)	22, 76, 95
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	452
Sse9I	AATT	3 cut(s)	21, 239, 414
SspI	AATATT	1 cut(s)	222
SspMI	CTAG	4 cut(s)	357, 501, 593, 670
SstI	GAGCTC	1 cut(s)	618
StyD4I	CCNGG	2 cut(s)	481, 618
TaaI	ACNGT	3 cut(s)	142, 262, 286
TaqI	TCGA	1 cut(s)	137
TaqII	GACCGA	1 cut(s)	469
TasI	AATT	3 cut(s)	21, 239, 414
Tru1I	TTAA	2 cut(s)	159, 242
Tru9I	TTAA	2 cut(s)	159, 242
TscAI	CASTG	2 cut(s)	159, 632
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	6 cut(s)	215, 227, 290, 293, 341, 664
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	159, 632
VpaK11BI	GGWCC	1 cut(s)	452
XbaI	TCTAGA	1 cut(s)	592
XspI	CTAG	4 cut(s)	357, 501, 593, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.