RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 18 |
| Acc36I | ACCTGC | 2 cut(s) | 414, 485 |
| AclWI | GGATC | 1 cut(s) | 5 |
| AcuI | CTGAAG | 1 cut(s) | 326 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 107, 304 |
| AgsI | TTSAA | 4 cut(s) | 46, 65, 454, 650 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 344 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 608, 640 |
| AluBI | AGCT | 3 cut(s) | 59, 131, 446 |
| AluI | AGCT | 3 cut(s) | 59, 131, 446 |
| Alw21I | GWGCWC | 1 cut(s) | 133 |
| Alw26I | GTCTC | 2 cut(s) | 352, 582 |
| AlwI | GGATC | 1 cut(s) | 5 |
| AoxI | GGCC | 2 cut(s) | 183, 295 |
| ApeKI | GCWGC | 2 cut(s) | 377, 443 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 623 |
| AspLEI | GCGC | 1 cut(s) | 19 |
| BanII | GRGCYC | 2 cut(s) | 133, 276 |
| BbsI | GAAGAC | 1 cut(s) | 615 |
| Bbv12I | GWGCWC | 1 cut(s) | 133 |
| BbvI | GCAGC | 2 cut(s) | 389, 455 |
| BccI | CCATC | 1 cut(s) | 86 |
| BceAI | ACGGC | 1 cut(s) | 170 |
| BclI | TGATCA | 1 cut(s) | 331 |
| BcoDI | GTCTC | 2 cut(s) | 352, 582 |
| BfaI | CTAG | 1 cut(s) | 402 |
| BfuAI | ACCTGC | 2 cut(s) | 414, 485 |
| BisI | GCNGC | 2 cut(s) | 378, 444 |
| BlsI | GCNGC | 2 cut(s) | 379, 445 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 344 |
| BmsI | GCATC | 3 cut(s) | 40, 226, 245 |
| BpiI | GAAGAC | 1 cut(s) | 615 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 258, 290 |
| BpuEI | CTTGAG | 2 cut(s) | 117, 566 |
| BsaI | GGTCTC | 2 cut(s) | 352, 582 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 608, 638 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 107, 304 |
| BseGI | GGATG | 1 cut(s) | 55 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 107, 304 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseXI | GCAGC | 2 cut(s) | 389, 455 |
| BsgI | GTGCAG | 1 cut(s) | 25 |
| BshFI | GGCC | 2 cut(s) | 185, 297 |
| BsiHKAI | GWGCWC | 1 cut(s) | 133 |
| BslFI | GGGAC | 1 cut(s) | 445 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 107, 304 |
| BsmAI | GTCTC | 2 cut(s) | 352, 582 |
| BsmFI | GGGAC | 1 cut(s) | 445 |
| BsnI | GGCC | 2 cut(s) | 185, 297 |
| Bso31I | GGTCTC | 2 cut(s) | 352, 582 |
| Bsp1286I | GDGCHC | 2 cut(s) | 133, 276 |
| Bsp143I | GATC | 3 cut(s) | 10, 331, 404 |
| BspANI | GGCC | 2 cut(s) | 185, 297 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspMI | ACCTGC | 2 cut(s) | 414, 485 |
| BspPI | GGATC | 1 cut(s) | 5 |
| BspTNI | GGTCTC | 2 cut(s) | 352, 582 |
| BssMI | GATC | 3 cut(s) | 10, 331, 404 |
| Bst4CI | ACNGT | 2 cut(s) | 412, 436 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 374, 500 |
| BstDEI | CTNAG | 1 cut(s) | 240 |
| BstF5I | GGATG | 1 cut(s) | 55 |
| BstHHI | GCGC | 1 cut(s) | 19 |
| BstKTI | GATC | 3 cut(s) | 13, 334, 407 |
| BstMAI | GTCTC | 2 cut(s) | 352, 582 |
| BstMBI | GATC | 3 cut(s) | 10, 331, 404 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 374, 500 |
| BstV1I | GCAGC | 2 cut(s) | 389, 455 |
| BstV2I | GAAGAC | 1 cut(s) | 615 |
| BsuRI | GGCC | 2 cut(s) | 185, 297 |
| BtsCI | GGATG | 1 cut(s) | 55 |
| BtsI | GCAGTG | 1 cut(s) | 13 |
| BtsIMutI | CAGTG | 2 cut(s) | 13, 309 |
| BveI | ACCTGC | 2 cut(s) | 414, 485 |
| CfoI | GCGC | 1 cut(s) | 19 |
| CviAII | CATG | 1 cut(s) | 521 |
| DdeI | CTNAG | 1 cut(s) | 240 |
| DpnI | GATC | 3 cut(s) | 12, 333, 406 |
| DpnII | GATC | 3 cut(s) | 10, 331, 404 |
| DriI | GACNNNNNGTC | 1 cut(s) | 344 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 344 |
| Ecl136II | GAGCTC | 1 cut(s) | 131 |
| Eco147I | AGGCCT | 1 cut(s) | 297 |
| Eco24I | GRGCYC | 2 cut(s) | 133, 276 |
| Eco31I | GGTCTC | 2 cut(s) | 352, 582 |
| Eco53kI | GAGCTC | 1 cut(s) | 131 |
| Eco57I | CTGAAG | 1 cut(s) | 326 |
| EcoICRI | GAGCTC | 1 cut(s) | 131 |
| EcoT38I | GRGCYC | 2 cut(s) | 133, 276 |
| FaeI | CATG | 1 cut(s) | 524 |
| FaiI | YATR | 5 cut(s) | 41, 120, 152, 429, 522 |
| FaqI | GGGAC | 1 cut(s) | 445 |
| FatI | CATG | 1 cut(s) | 520 |
| FbaI | TGATCA | 1 cut(s) | 331 |
| Fnu4HI | GCNGC | 2 cut(s) | 378, 444 |
| FokI | GGATG | 1 cut(s) | 62 |
| FriOI | GRGCYC | 2 cut(s) | 133, 276 |
| Fsp4HI | GCNGC | 2 cut(s) | 378, 444 |
| FspBI | CTAG | 1 cut(s) | 402 |
| FspI | TGCGCA | 1 cut(s) | 18 |
| GlaI | GCGC | 1 cut(s) | 18 |
| GluI | GCNGC | 2 cut(s) | 378, 444 |
| HaeIII | GGCC | 2 cut(s) | 185, 297 |
| HhaI | GCGC | 1 cut(s) | 19 |
| Hin1II | CATG | 1 cut(s) | 524 |
| Hin6I | GCGC | 1 cut(s) | 17 |
| HinP1I | GCGC | 1 cut(s) | 17 |
| HincII | GTYRAC | 1 cut(s) | 310 |
| HindII | GTYRAC | 1 cut(s) | 310 |
| HpaI | GTTAAC | 1 cut(s) | 310 |
| Hpy166II | GTNNAC | 2 cut(s) | 190, 310 |
| Hpy188I | TCNGA | 2 cut(s) | 85, 241 |
| Hpy188III | TCNNGA | 2 cut(s) | 62, 134 |
| Hpy8I | GTNNAC | 2 cut(s) | 190, 310 |
| HpyAV | CCTTC | 5 cut(s) | 105, 481, 526, 542, 548 |
| HpyCH4III | ACNGT | 2 cut(s) | 412, 436 |
| HpyCH4V | TGCA | 7 cut(s) | 6, 32, 158, 236, 377, 476, 494 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 374, 500 |
| HpyF3I | CTNAG | 1 cut(s) | 240 |
| Hsp92II | CATG | 1 cut(s) | 524 |
| HspAI | GCGC | 1 cut(s) | 17 |
| Ksp22I | TGATCA | 1 cut(s) | 331 |
| KspAI | GTTAAC | 1 cut(s) | 310 |
| Kzo9I | GATC | 3 cut(s) | 10, 331, 404 |
| LmnI | GCTCC | 1 cut(s) | 440 |
| LpnPI | CCDG | 5 cut(s) | 27, 329, 409, 468, 480 |
| Lsp1109I | GCAGC | 2 cut(s) | 389, 455 |
| LweI | GCATC | 3 cut(s) | 40, 226, 245 |
| MaeI | CTAG | 1 cut(s) | 402 |
| MaeIII | GTNAC | 1 cut(s) | 247 |
| MalI | GATC | 3 cut(s) | 12, 333, 406 |
| MboI | GATC | 3 cut(s) | 10, 331, 404 |
| MboII | GAAGA | 3 cut(s) | 536, 551, 620 |
| MfeI | CAATTG | 1 cut(s) | 171 |
| MhlI | GDGCHC | 2 cut(s) | 133, 276 |
| MluCI | AATT | 4 cut(s) | 171, 284, 389, 598 |
| MnlI | CCTC | 3 cut(s) | 175, 554, 647 |
| MroXI | GAANNNNTTC | 1 cut(s) | 623 |
| MseI | TTAA | 2 cut(s) | 309, 392 |
| MunI | CAATTG | 1 cut(s) | 171 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 374, 500 |
| NdeII | GATC | 3 cut(s) | 10, 331, 404 |
| NlaIII | CATG | 1 cut(s) | 524 |
| NsbI | TGCGCA | 1 cut(s) | 18 |
| PceI | AGGCCT | 1 cut(s) | 297 |
| PdmI | GAANNNNTTC | 1 cut(s) | 623 |
| PkrI | GCNGC | 2 cut(s) | 379, 445 |
| Psp124BI | GAGCTC | 1 cut(s) | 133 |
| SacI | GAGCTC | 1 cut(s) | 133 |
| SaqAI | TTAA | 2 cut(s) | 309, 392 |
| SatI | GCNGC | 2 cut(s) | 378, 444 |
| Sau3AI | GATC | 3 cut(s) | 10, 331, 404 |
| SduI | GDGCHC | 2 cut(s) | 133, 276 |
| SfaNI | GCATC | 3 cut(s) | 40, 226, 245 |
| SmlI | CTYRAG | 2 cut(s) | 132, 581 |
| SmoI | CTYRAG | 2 cut(s) | 132, 581 |
| Sse9I | AATT | 4 cut(s) | 171, 284, 389, 598 |
| SseBI | AGGCCT | 1 cut(s) | 297 |
| SspI | AATATT | 1 cut(s) | 372 |
| SspMI | CTAG | 1 cut(s) | 402 |
| SstI | GAGCTC | 1 cut(s) | 133 |
| StuI | AGGCCT | 1 cut(s) | 297 |
| TaaI | ACNGT | 2 cut(s) | 412, 436 |
| TaqI | TCGA | 1 cut(s) | 637 |
| TasI | AATT | 4 cut(s) | 171, 284, 389, 598 |
| Tru1I | TTAA | 2 cut(s) | 309, 392 |
| Tru9I | TTAA | 2 cut(s) | 309, 392 |
| TscAI | CASTG | 2 cut(s) | 13, 309 |
| TseI | GCWGC | 2 cut(s) | 377, 443 |
| TspDTI | ATGAA | 2 cut(s) | 225, 537 |
| TspRI | CASTG | 2 cut(s) | 13, 309 |
| XmnI | GAANNNNTTC | 1 cut(s) | 623 |
| XspI | CTAG | 1 cut(s) | 402 |