RchiOBHm_Chr5g0046611

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000747
Physical Location & Seq
Reverse (-)
42760030 .. 42762211
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32460

Sequence Viewer

Length: 798 bp
ATGTACTGTCGAGTTGATCCTATGCAATCAAAGATTGCATTTGTTATGTTCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGGGAGCAACAATGGTTGATTATATTGTGACTATATCTCCTGTTGAAAATTATGTACCAATTAATGAGATGCCGCAATTGGTGGAAAGTGCTGTTTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGTTGAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAGAGAAATCGACAGTAGGCTTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGGTATGTGACTGTGGCAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGACAGGGCAGGCTGCAGGTACGAAAACTAGAGAAAAGTTCCATATGGTTGTGTCAAACTTGACTGCAAAGGTAGGCTTGCTTCACTCTGTATTATTTACGCAAAACAAAGTTGCATGTGTGTATCCACCCTCTAATAATCAACTGTGCTACAAATTTCAGAGAGCTATTTTTGTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

265

Amino Acids

28.91

Weight (kDa)

9.35

Isoelectric Point (pI)

27.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 552, 623
AciI CCGC 1 cut(s) 161
AclWI GGATC 2 cut(s) 11, 550
AcsI RAATTY 1 cut(s) 770
AcuI CTGAAG 1 cut(s) 464
AfaI GTAC 3 cut(s) 5, 144, 637
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 4 cut(s) 52, 71, 134, 592
AhdI GACNNNNNGTC 1 cut(s) 482
AluBI AGCT 4 cut(s) 65, 269, 584, 782
AluI AGCT 4 cut(s) 65, 269, 584, 782
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 490
AlwI GGATC 2 cut(s) 11, 550
ApeKI GCWGC 6 cut(s) 188, 503, 515, 578, 581, 629
ApoI RAATTY 1 cut(s) 770
AseI ATTAAT 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 201
BanII GRGCYC 2 cut(s) 271, 414
BarI GAAGNNNNNNTAC 2 cut(s) 681, 713
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 6 cut(s) 175, 515, 527, 590, 593, 616
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 308
BciVI GTATCC 1 cut(s) 750
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 490
BfaI CTAG 2 cut(s) 285, 645
BfmI CTRYAG 1 cut(s) 630
BfuAI ACCTGC 2 cut(s) 552, 623
BfuI GTATCC 1 cut(s) 750
BisI GCNGC 7 cut(s) 161, 189, 504, 516, 579, 582, 630
BlsI GCNGC 7 cut(s) 162, 190, 505, 517, 580, 583, 631
BmeRI GACNNNNNGTC 1 cut(s) 482
BmsI GCATC 5 cut(s) 46, 147, 310, 364, 383
BplI GAGNNNNNCTC 2 cut(s) 396, 428
BpuEI CTTGAG 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 490
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 544
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 544
BseXI GCAGC 6 cut(s) 175, 515, 527, 590, 593, 616
BsiHKAI GWGCWC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 490
Bso31I GGTCTC 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 271, 414
Bsp143I GATC 3 cut(s) 16, 469, 542
BspACI CCGC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 370
BspMAI CTGCAG 1 cut(s) 634
BspMI ACCTGC 2 cut(s) 552, 623
BspPI GGATC 2 cut(s) 11, 550
BspTNI GGTCTC 1 cut(s) 490
BsrI ACTGG 1 cut(s) 544
BssMI GATC 3 cut(s) 16, 469, 542
Bst4CI ACNGT 5 cut(s) 8, 430, 550, 574, 762
BstAPI GCANNNNNTGC 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 627, 695
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 3 cut(s) 19, 472, 545
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 3 cut(s) 16, 469, 542
BstMWI GCNNNNNNNGC 3 cut(s) 185, 194, 512
BstNSI RCATGY 1 cut(s) 735
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 6 cut(s) 175, 515, 527, 590, 593, 616
BsuI GTATCC 1 cut(s) 750
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 447
BveI ACCTGC 2 cut(s) 552, 623
Cac8I GCNNGC 2 cut(s) 627, 695
Csp6I GTAC 3 cut(s) 4, 143, 636
CviAII CATG 1 cut(s) 732
CviQI GTAC 3 cut(s) 4, 143, 636
DdeI CTNAG 1 cut(s) 378
DpnI GATC 3 cut(s) 18, 471, 544
DpnII GATC 3 cut(s) 16, 469, 542
DriI GACNNNNNGTC 1 cut(s) 482
Eam1105I GACNNNNNGTC 1 cut(s) 482
Ecl136II GAGCTC 1 cut(s) 269
Eco24I GRGCYC 2 cut(s) 271, 414
Eco31I GGTCTC 1 cut(s) 490
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 269
EcoT38I GRGCYC 2 cut(s) 271, 414
FaeI CATG 1 cut(s) 735
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FatI CATG 1 cut(s) 731
FauNDI CATATG 1 cut(s) 660
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 7 cut(s) 161, 189, 504, 516, 579, 582, 630
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 2 cut(s) 271, 414
Fsp4HI GCNGC 7 cut(s) 161, 189, 504, 516, 579, 582, 630
FspBI CTAG 2 cut(s) 285, 645
GluI GCNGC 7 cut(s) 161, 189, 504, 516, 579, 582, 630
Hin1II CATG 1 cut(s) 735
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HpaI GTTAAC 1 cut(s) 448
HphI GGTGA 1 cut(s) 201
Hpy166II GTNNAC 2 cut(s) 328, 448
Hpy188I TCNGA 2 cut(s) 379, 777
Hpy188III TCNNGA 3 cut(s) 68, 90, 272
Hpy8I GTNNAC 2 cut(s) 328, 448
HpyAV CCTTC 1 cut(s) 243
HpyCH4III ACNGT 5 cut(s) 8, 430, 550, 574, 762
HpyCH4V TGCA 8 cut(s) 25, 38, 296, 374, 515, 632, 683, 731
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 194, 512
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 1 cut(s) 735
Ksp22I TGATCA 1 cut(s) 469
KspAI GTTAAC 1 cut(s) 448
Kzo9I GATC 3 cut(s) 16, 469, 542
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 8 cut(s) 141, 207, 467, 525, 547, 606, 611, 618
Lsp1109I GCAGC 6 cut(s) 175, 515, 527, 590, 593, 616
LweI GCATC 5 cut(s) 46, 147, 310, 364, 383
MaeI CTAG 2 cut(s) 285, 645
MaeIII GTNAC 3 cut(s) 115, 385, 568
MalI GATC 3 cut(s) 18, 471, 544
MboI GATC 3 cut(s) 16, 469, 542
MfeI CAATTG 2 cut(s) 164, 309
MhlI GDGCHC 2 cut(s) 271, 414
MluCI AATT 6 cut(s) 136, 147, 164, 309, 527, 770
MnlI CCTC 2 cut(s) 214, 757
MseI TTAA 3 cut(s) 150, 447, 530
MunI CAATTG 2 cut(s) 164, 309
MwoI GCNNNNNNNGC 3 cut(s) 185, 194, 512
NdeI CATATG 1 cut(s) 660
NdeII GATC 3 cut(s) 16, 469, 542
NlaIII CATG 1 cut(s) 735
NmuCI GTSAC 2 cut(s) 115, 568
NspI RCATGY 1 cut(s) 735
PkrI GCNGC 7 cut(s) 162, 190, 505, 517, 580, 583, 631
PshBI ATTAAT 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 634
RsaI GTAC 3 cut(s) 5, 144, 637
RsaNI GTAC 3 cut(s) 4, 143, 636
SacI GAGCTC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 150, 447, 530
SatI GCNGC 7 cut(s) 161, 189, 504, 516, 579, 582, 630
Sau3AI GATC 3 cut(s) 16, 469, 542
SduI GDGCHC 2 cut(s) 271, 414
SfaNI GCATC 5 cut(s) 46, 147, 310, 364, 383
SfcI CTRYAG 1 cut(s) 630
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 6 cut(s) 136, 147, 164, 309, 527, 770
SsiI CCGC 1 cut(s) 161
SspI AATATT 1 cut(s) 510
SspMI CTAG 2 cut(s) 285, 645
SstI GAGCTC 1 cut(s) 271
TaaI ACNGT 5 cut(s) 8, 430, 550, 574, 762
TaqI TCGA 2 cut(s) 10, 425
TasI AATT 6 cut(s) 136, 147, 164, 309, 527, 770
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 163
Tru1I TTAA 3 cut(s) 150, 447, 530
Tru9I TTAA 3 cut(s) 150, 447, 530
TscAI CASTG 1 cut(s) 447
TseFI GTSAC 2 cut(s) 115, 568
TseI GCWGC 6 cut(s) 188, 503, 515, 578, 581, 629
Tsp45I GTSAC 2 cut(s) 115, 568
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 1 cut(s) 447
VspI ATTAAT 1 cut(s) 150
XapI RAATTY 1 cut(s) 770
XceI RCATGY 1 cut(s) 735
XspI CTAG 2 cut(s) 285, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.