Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

29619577 .. 29620500

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTTGATCAGATTGTGACTATATCTCCTGTTGAAAATTATGTACCAATTAATGAGATGCTGGTAAGTTTCCTTGAAAGTTGTCCGCAATTTGTTGTTTCCTTGGCCAAAACTTGCAGTTTATTAGTGCAATATTTGCAAGAAGTAAGATTGGTAGAAAGTGTTGTTTGTGCTGCCCCGGCTGAAAGTGTTTCACCAAATGCTGAGGATAAAGATGGCTCTCCTAACAATCGAAGGGTGTATGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGTCGTGAACAAGGCTAAAGCATTTGATGAAAAGTATCAATTGAGAGCAAGTGCATCTGAGAAAGCAACTTTCTTTGACAAGAGAGTGGGGCTCACAGAGAAATTGACAATAGGCCTTTTAGCGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAGATAAAACAATGGCAGCAATATTTAGAGTAGGGAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

172

Amino Acids

18.82

Weight (kDa)

8.41

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	86, 428
AcoI	YGGCCR	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	35, 77
AhdI	GACNNNNNGTC	2 cut(s)	305, 467
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	475
AoxI	GGCC	2 cut(s)	105, 418
ApeKI	GCWGC	2 cut(s)	173, 488
AseI	ATTAAT	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	186
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	256, 399
Bbv12I	GWGCWC	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	160, 500
BccI	CCATC	1 cut(s)	209
BclI	TGATCA	2 cut(s)	7, 454
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	2 cut(s)	174, 489
BlsI	GCNGC	2 cut(s)	175, 490
Bme1390I	CCNGG	1 cut(s)	179
BmeRI	GACNNNNNGTC	2 cut(s)	305, 467
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	48, 368
BplI	GAGNNNNNCTC	2 cut(s)	381, 413
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	102, 177
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	102, 177
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	195, 354, 486
BseXI	GCAGC	2 cut(s)	160, 500
BshFI	GGCC	2 cut(s)	107, 420
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	107, 420
Bso31I	GGTCTC	1 cut(s)	475
Bsp1286I	GDGCHC	2 cut(s)	256, 399
Bsp143I	GATC	2 cut(s)	7, 454
BspACI	CCGC	2 cut(s)	86, 428
BspANI	GGCC	2 cut(s)	107, 420
BspCNI	CTCAG	3 cut(s)	196, 355, 485
BspTNI	GGTCTC	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	102, 177
BssMI	GATC	2 cut(s)	7, 454
BssT1I	CCWWGG	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstDEI	CTNAG	3 cut(s)	204, 363, 472
BstKTI	GATC	2 cut(s)	10, 457
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	2 cut(s)	7, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 179
BstSCI	CCNGG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	160, 500
BsuRI	GGCC	2 cut(s)	107, 420
Csp6I	GTAC	1 cut(s)	44
CviJI	RGCY	7 cut(s)	107, 182, 219, 254, 320, 397, 420
CviKI_1	RGCY	7 cut(s)	107, 182, 219, 254, 320, 397, 420
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	3 cut(s)	204, 363, 472
DpnI	GATC	2 cut(s)	9, 456
DpnII	GATC	2 cut(s)	7, 454
DriI	GACNNNNNGTC	2 cut(s)	305, 467
EaeI	YGGCCR	1 cut(s)	105
Eam1105I	GACNNNNNGTC	2 cut(s)	305, 467
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	420
Eco24I	GRGCYC	2 cut(s)	256, 399
Eco31I	GGTCTC	1 cut(s)	475
Eco53kI	GAGCTC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	256, 399
ErhI	CCWWGG	1 cut(s)	102
FaiI	YATR	4 cut(s)	23, 42, 243, 275
FbaI	TGATCA	2 cut(s)	7, 454
Fnu4HI	GCNGC	2 cut(s)	174, 489
FriOI	GRGCYC	2 cut(s)	256, 399
Fsp4HI	GCNGC	2 cut(s)	174, 489
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	174, 489
HaeIII	GGCC	2 cut(s)	107, 420
HapII	CCGG	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	313, 433
Hpy188I	TCNGA	3 cut(s)	12, 364, 475
Hpy188III	TCNNGA	2 cut(s)	257, 310
Hpy8I	GTNNAC	2 cut(s)	313, 433
HpyAV	CCTTC	1 cut(s)	228
HpyCH4V	TGCA	5 cut(s)	117, 130, 139, 281, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 179
HpyF3I	CTNAG	3 cut(s)	204, 363, 472
Ksp22I	TGATCA	2 cut(s)	7, 454
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	7, 454
LpnPI	CCDG	4 cut(s)	42, 47, 192, 452
Lsp1109I	GCAGC	2 cut(s)	160, 500
LweI	GCATC	2 cut(s)	48, 368
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	9, 456
MboI	GATC	2 cut(s)	7, 454
MfeI	CAATTG	2 cut(s)	294, 344
MhlI	GDGCHC	2 cut(s)	256, 399
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	6 cut(s)	37, 48, 89, 294, 344, 407
MluNI	TGGCCA	1 cut(s)	107
MnlI	CCTC	1 cut(s)	199
Mox20I	TGGCCA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	2 cut(s)	51, 432
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	179
MunI	CAATTG	2 cut(s)	294, 344
MwoI	GCNNNNNNNGC	2 cut(s)	136, 179
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	2 cut(s)	7, 454
NmuCI	GTSAC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	175, 490
PshBI	ATTAAT	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	51, 432
SatI	GCNGC	2 cut(s)	174, 489
Sau3AI	GATC	2 cut(s)	7, 454
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	256, 399
SetI	ASST	3 cut(s)	256, 289, 471
SfaNI	GCATC	2 cut(s)	48, 368
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	6 cut(s)	37, 48, 89, 294, 344, 407
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	2 cut(s)	86, 428
SspI	AATATT	2 cut(s)	134, 495
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	256
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	102
TaqI	TCGA	1 cut(s)	232
TasI	AATT	6 cut(s)	37, 48, 89, 294, 344, 407
Tru1I	TTAA	2 cut(s)	51, 432
Tru9I	TTAA	2 cut(s)	51, 432
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	2 cut(s)	173, 488
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	348
VspI	ATTAAT	1 cut(s)	51
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.