RchiOBHm_Chr1g0378871

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000747
Physical Location & Seq
Forward (+)
65153536 .. 65155603
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60224

Sequence Viewer

Length: 516 bp
ATGTATTGTCGAGTTGATCCTGCGCAATCAAAGATTGCATTTGTTATGTTCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGAAATTGGTGGAAAGTGCTGTTTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGTTGAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAATGTCTAGTATGTTTGTAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAAAGAAATTGATAGTAGGCCTTTCAGTGGTTAACGAGAAAGTGAAGTATGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGCACCTTGGTTCAATGGTGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

171

Amino Acids

18.71

Weight (kDa)

9.36

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 24
AclWI GGATC 2 cut(s) 11, 478
AcuI CTGAAG 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 173, 370
AgsI TTSAA 3 cut(s) 52, 71, 503
AhdI GACNNNNNGTC 1 cut(s) 410
AluBI AGCT 2 cut(s) 65, 197
AluI AGCT 2 cut(s) 65, 197
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 418
AlwI GGATC 2 cut(s) 11, 478
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 4 cut(s) 116, 431, 443, 489
AspLEI GCGC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 129
BanII GRGCYC 2 cut(s) 199, 342
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 4 cut(s) 103, 443, 455, 501
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 236
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 418
BfaI CTAG 1 cut(s) 213
BisI GCNGC 4 cut(s) 117, 432, 444, 490
BlsI GCNGC 4 cut(s) 118, 433, 445, 491
BmeRI GACNNNNNGTC 1 cut(s) 410
BmsI GCATC 4 cut(s) 46, 238, 292, 311
BplI GAGNNNNNCTC 2 cut(s) 324, 356
BpuEI CTTGAG 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 495
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 370
Bse1I ACTGG 1 cut(s) 472
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 173, 370
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 472
BseXI GCAGC 4 cut(s) 103, 443, 455, 501
BshFI GGCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 173, 370
BsmAI GTCTC 1 cut(s) 418
BsnI GGCC 1 cut(s) 363
Bso31I GGTCTC 1 cut(s) 418
Bsp1286I GDGCHC 2 cut(s) 199, 342
Bsp143I GATC 3 cut(s) 16, 397, 470
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 1 cut(s) 298
BspPI GGATC 2 cut(s) 11, 478
BspTNI GGTCTC 1 cut(s) 418
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 3 cut(s) 16, 397, 470
BssT1I CCWWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 478
BstAPI GCANNNNNTGC 1 cut(s) 440
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 3 cut(s) 19, 400, 473
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 3 cut(s) 16, 397, 470
BstMWI GCNNNNNNNGC 3 cut(s) 113, 122, 440
BstV1I GCAGC 4 cut(s) 103, 443, 455, 501
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 375
CfoI GCGC 1 cut(s) 25
CviJI RGCY 6 cut(s) 65, 162, 197, 263, 340, 363
CviKI_1 RGCY 6 cut(s) 65, 162, 197, 263, 340, 363
DdeI CTNAG 1 cut(s) 306
DpnI GATC 3 cut(s) 18, 399, 472
DpnII GATC 3 cut(s) 16, 397, 470
DriI GACNNNNNGTC 1 cut(s) 410
Eam1105I GACNNNNNGTC 1 cut(s) 410
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 495
Eco147I AGGCCT 1 cut(s) 363
Eco24I GRGCYC 2 cut(s) 199, 342
Eco31I GGTCTC 1 cut(s) 418
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 495
EcoT38I GRGCYC 2 cut(s) 199, 342
ErhI CCWWGG 1 cut(s) 495
FaiI YATR 4 cut(s) 47, 186, 218, 393
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 4 cut(s) 117, 432, 444, 490
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 2 cut(s) 199, 342
Fsp4HI GCNGC 4 cut(s) 117, 432, 444, 490
FspBI CTAG 1 cut(s) 213
FspI TGCGCA 1 cut(s) 24
GlaI GCGC 1 cut(s) 24
GluI GCNGC 4 cut(s) 117, 432, 444, 490
HaeIII GGCC 1 cut(s) 363
HhaI GCGC 1 cut(s) 25
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HpaI GTTAAC 1 cut(s) 376
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 2 cut(s) 256, 376
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 68, 200
Hpy8I GTNNAC 2 cut(s) 256, 376
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 3 cut(s) 38, 302, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 122, 440
HpyF3I CTNAG 1 cut(s) 306
HspAI GCGC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 397
KspAI GTTAAC 1 cut(s) 376
Kzo9I GATC 3 cut(s) 16, 397, 470
LpnPI CCDG 4 cut(s) 33, 135, 395, 453
Lsp1109I GCAGC 4 cut(s) 103, 443, 455, 501
LweI GCATC 4 cut(s) 46, 238, 292, 311
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 18, 399, 472
MboI GATC 3 cut(s) 16, 397, 470
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 199, 342
MluCI AATT 4 cut(s) 92, 237, 350, 455
MnlI CCTC 1 cut(s) 142
MseI TTAA 2 cut(s) 375, 458
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 3 cut(s) 113, 122, 440
NdeII GATC 3 cut(s) 16, 397, 470
NsbI TGCGCA 1 cut(s) 24
PceI AGGCCT 1 cut(s) 363
PkrI GCNGC 4 cut(s) 118, 433, 445, 491
Psp124BI GAGCTC 1 cut(s) 199
SacI GAGCTC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 375, 458
SatI GCNGC 4 cut(s) 117, 432, 444, 490
Sau3AI GATC 3 cut(s) 16, 397, 470
SduI GDGCHC 2 cut(s) 199, 342
SetI ASST 5 cut(s) 67, 199, 232, 414, 497
SfaNI GCATC 4 cut(s) 46, 238, 292, 311
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 4 cut(s) 92, 237, 350, 455
SseBI AGGCCT 1 cut(s) 363
SspI AATATT 1 cut(s) 438
SspMI CTAG 1 cut(s) 213
SstI GAGCTC 1 cut(s) 199
StuI AGGCCT 1 cut(s) 363
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 1 cut(s) 478
TaqI TCGA 2 cut(s) 10, 89
TasI AATT 4 cut(s) 92, 237, 350, 455
Tru1I TTAA 2 cut(s) 375, 458
Tru9I TTAA 2 cut(s) 375, 458
TscAI CASTG 1 cut(s) 375
TseI GCWGC 4 cut(s) 116, 431, 443, 489
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 1 cut(s) 375
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.