Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

802371 .. 807058

Gene Structure 4688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1007200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAGCAGCAGACGAGGACAGTCCAAGTAAAGCAACTGTCAGATCTAGCTAGCGAGAGAGAGATTCACGAGTTCTTCTCCTTCTCTGGGGAAATCGAACGCATTCATATCCAACGTGAGCCAGGGAAATCAAAGACTGCATTTGTTACTTTCAAGGATCCCAAAGCTCTTGAAATCGCGTTGTTGTTATCGGGAGCAACAATAGTAGATCAGATCGTGACTATTTCTCCTGTTCAAAATTATGTACCAATTGAGATGCATGAGGTTAGGATGGTTGTAAGTGCTGATTCTGTTGCCCCTGCTGAAAATATTTCACCAGATGCTGAGGATAAAACTGGCTCCCCTACCAGGGTGTATGTTAATAAAGCACAAGATGTGGTGACCACTATGTTTGCAAGGGGTTCGGCTATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGACAGCAAGTGCATCAGAGAAGGTCATTTCCTTTGACAGGAAAGTGGGGCTTACAGAGAAATTGACAGTAGGCATTTCCGTGGTTAATGAGAAAGTGAAGTCTGTTGATCAGAGGCTTCATGTCTCAGATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTGAATGATACGGGGTCAGCTGTCAAAACAAGCAGGTATGTGACTGCTGGAGCAGCGTGGCTAAATGGTGCTTTTGGTAAGGTGGCAAAGGCGGGACAGGTTGCAGGTACAAAAACCAGAGAAAAGTTCCATATGGCTGTCTCAAACTTGACGGCAAAGGATCCAATTGCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

268

Amino Acids

28.97

Weight (kDa)

9.26

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	651, 722
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	719
AclWI	GGATC	4 cut(s)	152, 165, 782, 795
AfaI	GTAC	2 cut(s)	246, 736
AfiI	CCNNNNNNNGG	4 cut(s)	87, 348, 349, 498
AgsI	TTSAA	4 cut(s)	154, 173, 236, 631
AjnI	CCWGG	2 cut(s)	121, 347
AluBI	AGCT	3 cut(s)	50, 167, 647
AluI	AGCT	3 cut(s)	50, 167, 647
Alw26I	GTCTC	2 cut(s)	589, 772
AlwI	GGATC	4 cut(s)	152, 165, 782, 795
AlwNI	CAGNNNCTG	1 cut(s)	323
ApeKI	GCWGC	6 cut(s)	4, 7, 602, 614, 680, 797
Asp700I	GAANNNNTTC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	306, 391
AsuNHI	GCTAGC	1 cut(s)	50
BamHI	GGATCC	2 cut(s)	157, 787
BauI	CACGAG	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	6 cut(s)	16, 19, 614, 626, 692, 784
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	2 cut(s)	407, 795
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BciT130I	CCWGG	2 cut(s)	123, 349
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	589, 772
BfaI	CTAG	2 cut(s)	47, 51
BfuAI	ACCTGC	2 cut(s)	651, 722
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	6 cut(s)	5, 8, 603, 615, 681, 798
BlsI	GCNGC	6 cut(s)	6, 9, 604, 616, 682, 799
Bme1390I	CCNGG	2 cut(s)	123, 349
BmiI	GGNNCC	3 cut(s)	159, 340, 789
BmrFI	CCNGG	2 cut(s)	123, 349
BmsI	GCATC	5 cut(s)	246, 310, 409, 463, 482
BmtI	GCTAGC	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	122, 348, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 348, 349, 498
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	2 cut(s)	123, 349
BseDI	CCNNGG	3 cut(s)	122, 348, 540
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	4 cut(s)	87, 348, 349, 498
BseMII	CTCAG	2 cut(s)	315, 600
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	6 cut(s)	16, 19, 614, 626, 692, 784
Bsh1236I	CGCG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	4 cut(s)	87, 348, 349, 498
BsmAI	GTCTC	2 cut(s)	589, 772
BsmFI	GGGAC	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	102
Bsp143I	GATC	6 cut(s)	43, 157, 208, 213, 568, 787
BspACI	CCGC	1 cut(s)	719
BspCNI	CTCAG	2 cut(s)	316, 599
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	159, 340, 789
BspMI	ACCTGC	2 cut(s)	651, 722
BspOI	GCTAGC	1 cut(s)	54
BspPI	GGATC	4 cut(s)	152, 165, 782, 795
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	3 cut(s)	122, 348, 540
BssMI	GATC	6 cut(s)	43, 157, 208, 213, 568, 787
BssSI	CACGAG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	2 cut(s)	123, 349
Bst4CI	ACNGT	3 cut(s)	22, 39, 529
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	324, 586
BstDSI	CCRYGG	1 cut(s)	540
BstEII	GGTNACC	1 cut(s)	379
BstENI	CCTNNNNNAGG	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	6 cut(s)	46, 160, 211, 216, 571, 790
BstMAI	GTCTC	2 cut(s)	589, 772
BstMBI	GATC	6 cut(s)	43, 157, 208, 213, 568, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	611, 680
BstNI	CCWGG	2 cut(s)	123, 349
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	121, 347
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	6 cut(s)	16, 19, 614, 626, 692, 784
BstX2I	RGATCY	3 cut(s)	43, 157, 787
BstYI	RGATCY	3 cut(s)	43, 157, 787
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	1 cut(s)	276
BveI	ACCTGC	2 cut(s)	651, 722
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	245, 735
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	2 cut(s)	260, 581
CviQI	GTAC	2 cut(s)	245, 735
DdeI	CTNAG	2 cut(s)	324, 586
DpnI	GATC	6 cut(s)	45, 159, 210, 215, 570, 789
DpnII	GATC	6 cut(s)	43, 157, 208, 213, 568, 787
Eco91I	GGTNACC	1 cut(s)	379
EcoNI	CCTNNNNNAGG	1 cut(s)	496
EcoO65I	GGTNACC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	121, 347
EcoT22I	ATGCAT	1 cut(s)	261
FaeI	CATG	2 cut(s)	263, 584
FaiI	YATR	9 cut(s)	108, 243, 261, 357, 389, 582, 666, 759, 761
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	2 cut(s)	259, 580
FauI	CCCGC	1 cut(s)	712
FauNDI	CATATG	1 cut(s)	759
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	6 cut(s)	5, 8, 603, 615, 681, 798
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	6 cut(s)	5, 8, 603, 615, 681, 798
FspBI	CTAG	2 cut(s)	47, 51
GluI	GCNGC	6 cut(s)	5, 8, 603, 615, 681, 798
GsuI	CTGGAG	1 cut(s)	696
Hin1II	CATG	2 cut(s)	263, 584
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	2 cut(s)	64, 287
HphI	GGTGA	2 cut(s)	306, 391
Hpy166II	GTNNAC	2 cut(s)	427, 462
Hpy188I	TCNGA	5 cut(s)	43, 213, 478, 573, 589
Hpy188III	TCNNGA	4 cut(s)	68, 170, 192, 217
Hpy8I	GTNNAC	2 cut(s)	427, 462
HpyAV	CCTTC	2 cut(s)	91, 475
HpyCH4III	ACNGT	3 cut(s)	22, 39, 529
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	7 cut(s)	4, 140, 259, 395, 473, 614, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	611, 680
HpyF3I	CTNAG	2 cut(s)	324, 586
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	263, 584
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	6 cut(s)	43, 157, 208, 213, 568, 787
LmnI	GCTCC	3 cut(s)	194, 344, 677
Lsp1109I	GCAGC	6 cut(s)	16, 19, 614, 626, 692, 784
LweI	GCATC	5 cut(s)	246, 310, 409, 463, 482
MaeI	CTAG	2 cut(s)	47, 51
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	4 cut(s)	145, 217, 379, 667
MalI	GATC	6 cut(s)	45, 159, 210, 215, 570, 789
MboI	GATC	6 cut(s)	43, 157, 208, 213, 568, 787
MboII	GAAGA	1 cut(s)	67
MfeI	CAATTG	2 cut(s)	249, 792
MflI	RGATCY	3 cut(s)	43, 157, 787
MluCI	AATT	5 cut(s)	238, 249, 521, 626, 792
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	4 cut(s)	9, 256, 319, 567
Mph1103I	ATGCAT	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	2 cut(s)	360, 546
MslI	CAYNNNNRTG	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	647
MspR9I	CCNGG	2 cut(s)	123, 349
MunI	CAATTG	2 cut(s)	249, 792
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	123, 349
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	611, 680
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	6 cut(s)	43, 157, 208, 213, 568, 787
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	263, 584
NlaIV	GGNNCC	3 cut(s)	159, 340, 789
NmuCI	GTSAC	3 cut(s)	217, 379, 667
NsiI	ATGCAT	1 cut(s)	261
PctI	GAATGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	64, 287
PkrI	GCNGC	6 cut(s)	6, 9, 604, 616, 682, 799
Psp6I	CCWGG	2 cut(s)	121, 347
PspEI	GGTNACC	1 cut(s)	379
PspGI	CCWGG	2 cut(s)	121, 347
PspN4I	GGNNCC	3 cut(s)	159, 340, 789
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	3 cut(s)	43, 157, 787
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	246, 736
RsaNI	GTAC	2 cut(s)	245, 735
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	2 cut(s)	360, 546
SatI	GCNGC	6 cut(s)	5, 8, 603, 615, 681, 798
Sau3AI	GATC	6 cut(s)	43, 157, 208, 213, 568, 787
ScrFI	CCNGG	2 cut(s)	123, 349
SfaNI	GCATC	5 cut(s)	246, 310, 409, 463, 482
SmiMI	CAYNNNNRTG	1 cut(s)	539
Sse9I	AATT	5 cut(s)	238, 249, 521, 626, 792
SsiI	CCGC	1 cut(s)	719
SspI	AATATT	2 cut(s)	310, 609
SspMI	CTAG	2 cut(s)	47, 51
StyD4I	CCNGG	2 cut(s)	121, 347
TaaI	ACNGT	3 cut(s)	22, 39, 529
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	96
TasI	AATT	5 cut(s)	238, 249, 521, 626, 792
TfiI	GAWTC	2 cut(s)	64, 287
Tru1I	TTAA	2 cut(s)	360, 546
Tru9I	TTAA	2 cut(s)	360, 546
TseFI	GTSAC	3 cut(s)	217, 379, 667
TseI	GCWGC	6 cut(s)	4, 7, 602, 614, 680, 797
Tsp45I	GTSAC	3 cut(s)	217, 379, 667
TspDTI	ATGAA	3 cut(s)	95, 462, 569
TspGWI	ACGGA	1 cut(s)	529
XagI	CCTNNNNNAGG	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	2 cut(s)	47, 51
Zsp2I	ATGCAT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.